Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22731 | 3' | -51.3 | NC_005091.1 | + | 45658 | 0.68 | 0.832675 |
Target: 5'- aGCCGACGCcGGCCAgcuucacaucgGCgacccgaucUUCGCCg -3' miRNA: 3'- -UGGCUGUGcCUGGUaaa--------CGa--------AAGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 26440 | 0.68 | 0.827156 |
Target: 5'- gACCGcGCGCGGGCCGccgggGCUgccaUCGUa -3' miRNA: 3'- -UGGC-UGUGCCUGGUaaa--CGAa---AGCGg -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 52773 | 0.68 | 0.827156 |
Target: 5'- aGCCGucGCACuGGCCGgcgUGCg--CGCCc -3' miRNA: 3'- -UGGC--UGUGcCUGGUaa-ACGaaaGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 25482 | 0.68 | 0.817788 |
Target: 5'- cGCCGAUAUGGGCUucgcggacGCguggaccaagUUCGCCg -3' miRNA: 3'- -UGGCUGUGCCUGGuaaa----CGa---------AAGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 34467 | 0.69 | 0.808216 |
Target: 5'- cGCCG-CGCGGucCCAcucgGCagUCGCCa -3' miRNA: 3'- -UGGCuGUGCCu-GGUaaa-CGaaAGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 21634 | 0.69 | 0.798452 |
Target: 5'- gACCGGCGgGcGGCCGUUcGUUcgaacgUCGCCc -3' miRNA: 3'- -UGGCUGUgC-CUGGUAAaCGAa-----AGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 17926 | 0.69 | 0.788507 |
Target: 5'- gGCCGAUAgCGGAaCGUUUGU---CGCCg -3' miRNA: 3'- -UGGCUGU-GCCUgGUAAACGaaaGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 31678 | 0.69 | 0.769155 |
Target: 5'- cGCCGACGaaGACCGggUGCgauaccguagccgCGCCg -3' miRNA: 3'- -UGGCUGUgcCUGGUaaACGaaa----------GCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 25084 | 0.71 | 0.692814 |
Target: 5'- aACCGAUcgGCGG-CCAcggagGCggUCGCCa -3' miRNA: 3'- -UGGCUG--UGCCuGGUaaa--CGaaAGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 20265 | 0.71 | 0.659383 |
Target: 5'- gGCCGACGCGucGCCGcUUUGCgaguagcCGCCg -3' miRNA: 3'- -UGGCUGUGCc-UGGU-AAACGaaa----GCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 10021 | 0.71 | 0.659383 |
Target: 5'- cCCGGCACGacggcGACCAcgUUGUUcaUCGCCg -3' miRNA: 3'- uGGCUGUGC-----CUGGUa-AACGAa-AGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 18908 | 0.71 | 0.656022 |
Target: 5'- cGCCGAgcaucgcggccaguCGCGGAuUCAcUUGCUgggUCGCCu -3' miRNA: 3'- -UGGCU--------------GUGCCU-GGUaAACGAa--AGCGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 33168 | 0.72 | 0.614487 |
Target: 5'- gGCCGACAacaaACCGUUUGCUUUUuCCa -3' miRNA: 3'- -UGGCUGUgcc-UGGUAAACGAAAGcGG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 52209 | 0.75 | 0.452805 |
Target: 5'- gGCCGACACGGACCcgguagUGCggggCGgCu -3' miRNA: 3'- -UGGCUGUGCCUGGuaa---ACGaaa-GCgG- -5' |
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22731 | 3' | -51.3 | NC_005091.1 | + | 54578 | 1.13 | 0.001472 |
Target: 5'- gACCGACACGGACCAUUUGCUUUCGCCg -3' miRNA: 3'- -UGGCUGUGCCUGGUAAACGAAAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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