miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22731 5' -55 NC_005091.1 + 55852 0.65 0.768202
Target:  5'- gUCAGCAacUGGCGCACGaG-CUGCa--- -3'
miRNA:   3'- -GGUCGU--ACCGCGUGUaCaGGCGcauc -5'
22731 5' -55 NC_005091.1 + 53130 0.66 0.747689
Target:  5'- --cGCAUagacgaaccGGCGCGC-UGUCuCGCGUGa -3'
miRNA:   3'- gguCGUA---------CCGCGUGuACAG-GCGCAUc -5'
22731 5' -55 NC_005091.1 + 48978 0.66 0.726707
Target:  5'- -uGGCG-GGCGCGCuaaAUGUCCcguuGCGUAc -3'
miRNA:   3'- ggUCGUaCCGCGUG---UACAGG----CGCAUc -5'
22731 5' -55 NC_005091.1 + 5361 0.67 0.694559
Target:  5'- aCCGGaaacaCAUGGCGC---UGUCCGCGc-- -3'
miRNA:   3'- -GGUC-----GUACCGCGuguACAGGCGCauc -5'
22731 5' -55 NC_005091.1 + 21696 0.69 0.5742
Target:  5'- aCgGGUcgGGCGUuuGCGUcGUCUGCGUAu -3'
miRNA:   3'- -GgUCGuaCCGCG--UGUA-CAGGCGCAUc -5'
22731 5' -55 NC_005091.1 + 23357 0.69 0.5742
Target:  5'- gUCAGCcgGGCG-GCAUGUCgCGCaGUGc -3'
miRNA:   3'- -GGUCGuaCCGCgUGUACAG-GCG-CAUc -5'
22731 5' -55 NC_005091.1 + 2078 0.7 0.49872
Target:  5'- gCCAGCAUGGcCGCgACAgcgucgaUGUgCGUGUAc -3'
miRNA:   3'- -GGUCGUACC-GCG-UGU-------ACAgGCGCAUc -5'
22731 5' -55 NC_005091.1 + 46834 0.71 0.469148
Target:  5'- gCCAGCuucucGGCGguCGUGUCCGgGa-- -3'
miRNA:   3'- -GGUCGua---CCGCguGUACAGGCgCauc -5'
22731 5' -55 NC_005091.1 + 39363 0.71 0.468144
Target:  5'- gCAGCAcacGGCGUACAUGucccauguccugaUCCGCGcGGa -3'
miRNA:   3'- gGUCGUa--CCGCGUGUAC-------------AGGCGCaUC- -5'
22731 5' -55 NC_005091.1 + 28142 0.71 0.43953
Target:  5'- gCCGGCGUGGCGUcCGUcGUCuuCGCGUc- -3'
miRNA:   3'- -GGUCGUACCGCGuGUA-CAG--GCGCAuc -5'
22731 5' -55 NC_005091.1 + 755 0.71 0.43953
Target:  5'- --cGCGcGGCGCA---GUCCGCGUAGa -3'
miRNA:   3'- gguCGUaCCGCGUguaCAGGCGCAUC- -5'
22731 5' -55 NC_005091.1 + 45787 0.72 0.420387
Target:  5'- gCCGGCGcGGCGCGCGgccgaCGCGUAc -3'
miRNA:   3'- -GGUCGUaCCGCGUGUacag-GCGCAUc -5'
22731 5' -55 NC_005091.1 + 54612 1.11 0.000809
Target:  5'- uCCAGCAUGGCGCACAUGUCCGCGUAGg -3'
miRNA:   3'- -GGUCGUACCGCGUGUACAGGCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.