Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22731 | 5' | -55 | NC_005091.1 | + | 55852 | 0.65 | 0.768202 |
Target: 5'- gUCAGCAacUGGCGCACGaG-CUGCa--- -3' miRNA: 3'- -GGUCGU--ACCGCGUGUaCaGGCGcauc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 54612 | 1.11 | 0.000809 |
Target: 5'- uCCAGCAUGGCGCACAUGUCCGCGUAGg -3' miRNA: 3'- -GGUCGUACCGCGUGUACAGGCGCAUC- -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 53130 | 0.66 | 0.747689 |
Target: 5'- --cGCAUagacgaaccGGCGCGC-UGUCuCGCGUGa -3' miRNA: 3'- gguCGUA---------CCGCGUGuACAG-GCGCAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 48978 | 0.66 | 0.726707 |
Target: 5'- -uGGCG-GGCGCGCuaaAUGUCCcguuGCGUAc -3' miRNA: 3'- ggUCGUaCCGCGUG---UACAGG----CGCAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 46834 | 0.71 | 0.469148 |
Target: 5'- gCCAGCuucucGGCGguCGUGUCCGgGa-- -3' miRNA: 3'- -GGUCGua---CCGCguGUACAGGCgCauc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 45787 | 0.72 | 0.420387 |
Target: 5'- gCCGGCGcGGCGCGCGgccgaCGCGUAc -3' miRNA: 3'- -GGUCGUaCCGCGUGUacag-GCGCAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 39363 | 0.71 | 0.468144 |
Target: 5'- gCAGCAcacGGCGUACAUGucccauguccugaUCCGCGcGGa -3' miRNA: 3'- gGUCGUa--CCGCGUGUAC-------------AGGCGCaUC- -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 28142 | 0.71 | 0.43953 |
Target: 5'- gCCGGCGUGGCGUcCGUcGUCuuCGCGUc- -3' miRNA: 3'- -GGUCGUACCGCGuGUA-CAG--GCGCAuc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 23357 | 0.69 | 0.5742 |
Target: 5'- gUCAGCcgGGCG-GCAUGUCgCGCaGUGc -3' miRNA: 3'- -GGUCGuaCCGCgUGUACAG-GCG-CAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 21696 | 0.69 | 0.5742 |
Target: 5'- aCgGGUcgGGCGUuuGCGUcGUCUGCGUAu -3' miRNA: 3'- -GgUCGuaCCGCG--UGUA-CAGGCGCAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 5361 | 0.67 | 0.694559 |
Target: 5'- aCCGGaaacaCAUGGCGC---UGUCCGCGc-- -3' miRNA: 3'- -GGUC-----GUACCGCGuguACAGGCGCauc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 2078 | 0.7 | 0.49872 |
Target: 5'- gCCAGCAUGGcCGCgACAgcgucgaUGUgCGUGUAc -3' miRNA: 3'- -GGUCGUACC-GCG-UGU-------ACAgGCGCAUc -5' |
|||||||
22731 | 5' | -55 | NC_005091.1 | + | 755 | 0.71 | 0.43953 |
Target: 5'- --cGCGcGGCGCA---GUCCGCGUAGa -3' miRNA: 3'- gguCGUaCCGCGUguaCAGGCGCAUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home