miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22732 3' -58.3 NC_005091.1 + 16685 0.66 0.580009
Target:  5'- aCCCGagcuucgGAGuGUaga-AGGCCCaCGCGCCg -3'
miRNA:   3'- -GGGCa------UUC-CGagaaUCCGGG-GCGCGG- -5'
22732 3' -58.3 NC_005091.1 + 45688 0.66 0.601219
Target:  5'- uUCGggauGGCUCcUGuacgcgucGGCCgCGCGCCg -3'
miRNA:   3'- gGGCauu-CCGAGaAU--------CCGGgGCGCGG- -5'
22732 3' -58.3 NC_005091.1 + 26320 0.66 0.601219
Target:  5'- gCUCGUAuucGGGCUgccgCUcAGGCCgaagcugccgCCGCGUCg -3'
miRNA:   3'- -GGGCAU---UCCGA----GAaUCCGG----------GGCGCGG- -5'
22732 3' -58.3 NC_005091.1 + 9659 0.68 0.466711
Target:  5'- cUCUGgcAGGCUCUcgugucccggcUGGGCCagcgacucaucgaCCGgGCCu -3'
miRNA:   3'- -GGGCauUCCGAGA-----------AUCCGG-------------GGCgCGG- -5'
22732 3' -58.3 NC_005091.1 + 7080 0.68 0.487361
Target:  5'- uCCUGaAGGGCaUCgagacGGCCgCCGCuGCCg -3'
miRNA:   3'- -GGGCaUUCCG-AGaau--CCGG-GGCG-CGG- -5'
22732 3' -58.3 NC_005091.1 + 40508 0.68 0.448426
Target:  5'- aCCGcGAGGCguaccccgAGGUCCCGCaGCUc -3'
miRNA:   3'- gGGCaUUCCGagaa----UCCGGGGCG-CGG- -5'
22732 3' -58.3 NC_005091.1 + 55229 0.68 0.448426
Target:  5'- cCCCGgucGGCUCguucgacgcGGCCCgUGCGCg -3'
miRNA:   3'- -GGGCauuCCGAGaau------CCGGG-GCGCGg -5'
22732 3' -58.3 NC_005091.1 + 23415 0.72 0.256642
Target:  5'- -aCGUGGGGC-CUUGGcGCuUCCGUGCCu -3'
miRNA:   3'- ggGCAUUCCGaGAAUC-CG-GGGCGCGG- -5'
22732 3' -58.3 NC_005091.1 + 53253 0.73 0.226272
Target:  5'- aCCGgAAGGCUCgc--GCCCgCGCGCUa -3'
miRNA:   3'- gGGCaUUCCGAGaaucCGGG-GCGCGG- -5'
22732 3' -58.3 NC_005091.1 + 11025 0.75 0.165664
Target:  5'- gCCGUAAGGCaUCgcccuuuGGCCCCGacggguuucCGCCg -3'
miRNA:   3'- gGGCAUUCCG-AGaau----CCGGGGC---------GCGG- -5'
22732 3' -58.3 NC_005091.1 + 54878 1.06 0.001066
Target:  5'- cCCCGUAAGGCUC-UAGGCCCCGCGCCg -3'
miRNA:   3'- -GGGCAUUCCGAGaAUCCGGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.