Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22734 | 3' | -67.2 | NC_005091.1 | + | 32845 | 0.66 | 0.220269 |
Target: 5'- uCGaugaCGGCCaugaugGGCUUUUCGuCCCGCGCUGc -3' miRNA: 3'- -GCg---GCCGG------CUGGAGGGC-GGGCGCGAC- -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 33220 | 0.74 | 0.054889 |
Target: 5'- gGCCGGCguaaugcgcggCGACCaUCUGCCCGCGCa- -3' miRNA: 3'- gCGGCCG-----------GCUGGaGGGCGGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 33589 | 0.67 | 0.203275 |
Target: 5'- aGCCGugaugcggaucgauGCCGGCCUCUCGaCCUaugaGCGCg- -3' miRNA: 3'- gCGGC--------------CGGCUGGAGGGC-GGG----CGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 34757 | 0.71 | 0.095621 |
Target: 5'- uGUCGGCC-AUgUCCCGgCCGCGCg- -3' miRNA: 3'- gCGGCCGGcUGgAGGGCgGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 36735 | 0.69 | 0.144423 |
Target: 5'- aCGCUGGCCGAaguCCagCCCGuCCCGUGa-- -3' miRNA: 3'- -GCGGCCGGCU---GGa-GGGC-GGGCGCgac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 38952 | 0.69 | 0.126799 |
Target: 5'- aCGCCGGCUgccgaGACCUaugaacaCCUGUUCGCGCa- -3' miRNA: 3'- -GCGGCCGG-----CUGGA-------GGGCGGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 39889 | 0.69 | 0.137259 |
Target: 5'- aCG-CGGCCGACCaUCCGgCUGCGCc- -3' miRNA: 3'- -GCgGCCGGCUGGaGGGCgGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 40928 | 0.7 | 0.117686 |
Target: 5'- gCGUaCGGCCGAgguugugaaCCugaacaccgcgUCCCGCCCaGCGCUGc -3' miRNA: 3'- -GCG-GCCGGCU---------GG-----------AGGGCGGG-CGCGAC- -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 44529 | 0.67 | 0.204772 |
Target: 5'- gGCCGucgcuGCCGucGCCUUcgucgCCGCCCGCGUc- -3' miRNA: 3'- gCGGC-----CGGC--UGGAG-----GGCGGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 48809 | 0.67 | 0.204772 |
Target: 5'- aCGCaUGGCCGuAUCUCCguguCGCUCGUGCa- -3' miRNA: 3'- -GCG-GCCGGC-UGGAGG----GCGGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 49807 | 0.68 | 0.172253 |
Target: 5'- aCGCaCGGCCGACgUgcCCCGCaugcagagcuaCGCGCa- -3' miRNA: 3'- -GCG-GCCGGCUGgA--GGGCGg----------GCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 51045 | 0.66 | 0.242478 |
Target: 5'- uCGCUuGCCGAUUUgCCCGUgcgcaCCGCGCUu -3' miRNA: 3'- -GCGGcCGGCUGGA-GGGCG-----GGCGCGAc -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 53423 | 0.69 | 0.14926 |
Target: 5'- uCGCUGGCCgugcauucgcccuuaGACCaUCCCGCcagaaagCCGCGCc- -3' miRNA: 3'- -GCGGCCGG---------------CUGG-AGGGCG-------GGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 53597 | 0.68 | 0.176599 |
Target: 5'- gCGCCGuCCGAuuccaaauagaaCCcCuuGCCCGUGCUGu -3' miRNA: 3'- -GCGGCcGGCU------------GGaGggCGGGCGCGAC- -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 53820 | 0.66 | 0.231149 |
Target: 5'- aCGCCGgaauucacguuuGCCGGCUUCaauuuCCCGCGCUa -3' miRNA: 3'- -GCGGC------------CGGCUGGAGggc--GGGCGCGAc -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 53927 | 0.67 | 0.181043 |
Target: 5'- gCGCCaGCCGAaacaaugCCUGCCCGUGUg- -3' miRNA: 3'- -GCGGcCGGCUgga----GGGCGGGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 54989 | 0.72 | 0.088171 |
Target: 5'- uCGuCCGGCCGGgCggCCCGCcgguaucCCGUGCUGa -3' miRNA: 3'- -GC-GGCCGGCUgGa-GGGCG-------GGCGCGAC- -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 55686 | 0.67 | 0.204272 |
Target: 5'- uGCCGcaucacuucGCCGAUCgccgCCUGCacgagcgcguggaCCGCGCUGa -3' miRNA: 3'- gCGGC---------CGGCUGGa---GGGCG-------------GGCGCGAC- -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 55907 | 0.68 | 0.168002 |
Target: 5'- gCGCagcaGGCCGACCaaCUGCgUGCGCa- -3' miRNA: 3'- -GCGg---CCGGCUGGagGGCGgGCGCGac -5' |
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22734 | 3' | -67.2 | NC_005091.1 | + | 56015 | 1.08 | 0.00012 |
Target: 5'- gCGCCGGCCGACCUCCCGCCCGCGCUGg -3' miRNA: 3'- -GCGGCCGGCUGGAGGGCGGGCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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