Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22735 | 3' | -57 | NC_005091.1 | + | 28368 | 0.67 | 0.616201 |
Target: 5'- aCCGGCAgcaaggCGaAGGUCAcgcaagCCGCCagcgcgucGCCGg -3' miRNA: 3'- -GGCCGUa-----GC-UCUAGUa-----GGCGGa-------CGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 27994 | 0.66 | 0.680484 |
Target: 5'- gCCGGCcgacacgaccugAUCGuAGGU-AUCCGCC-GCCa -3' miRNA: 3'- -GGCCG------------UAGC-UCUAgUAGGCGGaCGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 27799 | 0.72 | 0.321205 |
Target: 5'- gCCGGcCGUCGAGGUaCAcgcgcUCCGUC-GCCGa -3' miRNA: 3'- -GGCC-GUAGCUCUA-GU-----AGGCGGaCGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 26666 | 0.66 | 0.655913 |
Target: 5'- cCCGGCGUUGAGcgCAUCaCGCgcgaacaucugguaCgcgaugGCCGc -3' miRNA: 3'- -GGCCGUAGCUCuaGUAG-GCG--------------Ga-----CGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 25720 | 0.66 | 0.680484 |
Target: 5'- gCGGCcagcUCGGcGAUCggCUGCCcGCCGc -3' miRNA: 3'- gGCCGu---AGCU-CUAGuaGGCGGaCGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 25655 | 0.68 | 0.510905 |
Target: 5'- gCUGGCcgCGcAGuUCuUCCGCCUGCa- -3' miRNA: 3'- -GGCCGuaGC-UCuAGuAGGCGGACGgc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 23427 | 0.67 | 0.631231 |
Target: 5'- aCCGGCcUCGGGA-CGuggggccuuggcgcuUCCguGCCUGCUGc -3' miRNA: 3'- -GGCCGuAGCUCUaGU---------------AGG--CGGACGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 18522 | 0.67 | 0.593713 |
Target: 5'- cCCGGCGacaauuccgcauuUCGAcuacaCGUCCgGCCUGCUGa -3' miRNA: 3'- -GGCCGU-------------AGCUcua--GUAGG-CGGACGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 18174 | 0.7 | 0.432349 |
Target: 5'- cUCGGCAUCGAGAacaUgAUCCuGCgC-GCCGg -3' miRNA: 3'- -GGCCGUAGCUCU---AgUAGG-CG-GaCGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 17469 | 0.66 | 0.648407 |
Target: 5'- aCGaGCAcaaUCGAGAUCGUCgCGCggcagaacaUGCCa -3' miRNA: 3'- gGC-CGU---AGCUCUAGUAG-GCGg--------ACGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 16597 | 0.71 | 0.395797 |
Target: 5'- cUCGGUgcGUCGGGAaugccUCccugcgCCGCCUGCCa -3' miRNA: 3'- -GGCCG--UAGCUCU-----AGua----GGCGGACGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 14597 | 0.66 | 0.659126 |
Target: 5'- cCCGGCAUCGAGcggCA--CGCUUaCCGg -3' miRNA: 3'- -GGCCGUAGCUCua-GUagGCGGAcGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 11202 | 0.68 | 0.531489 |
Target: 5'- gCGGCAUCGGGA-CuUCCGCUUucgggggagGCCc -3' miRNA: 3'- gGCCGUAGCUCUaGuAGGCGGA---------CGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 10114 | 0.66 | 0.659126 |
Target: 5'- cCCGGCGaugaacaaCGuGGUCG-CCGUCgUGCCGg -3' miRNA: 3'- -GGCCGUa-------GCuCUAGUaGGCGG-ACGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 9348 | 0.66 | 0.669822 |
Target: 5'- gCGGCgagcaGUCGAc--CAUUCGCCgGCCGg -3' miRNA: 3'- gGCCG-----UAGCUcuaGUAGGCGGaCGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 8366 | 0.7 | 0.451348 |
Target: 5'- aCCGGCAUau---UCAUCUGCCggGCCa -3' miRNA: 3'- -GGCCGUAgcucuAGUAGGCGGa-CGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 8137 | 0.77 | 0.153098 |
Target: 5'- cCCGGCAUCGAGAUUAcgCGCUacugGCCGu -3' miRNA: 3'- -GGCCGUAGCUCUAGUagGCGGa---CGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 7087 | 0.77 | 0.14904 |
Target: 5'- -gGGCAUCGAGA-CggCCGCCgcUGCCGg -3' miRNA: 3'- ggCCGUAGCUCUaGuaGGCGG--ACGGC- -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 5628 | 0.7 | 0.451348 |
Target: 5'- aCGGUAUUGAcGAgCGUCaggGCCUGCCu -3' miRNA: 3'- gGCCGUAGCU-CUaGUAGg--CGGACGGc -5' |
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22735 | 3' | -57 | NC_005091.1 | + | 5074 | 0.7 | 0.423026 |
Target: 5'- aCCGGCcUCGGGGUUggCUGCCccUGCgGg -3' miRNA: 3'- -GGCCGuAGCUCUAGuaGGCGG--ACGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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