miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 3' -57 NC_005091.1 + 11202 0.68 0.531489
Target:  5'- gCGGCAUCGGGA-CuUCCGCUUucgggggagGCCc -3'
miRNA:   3'- gGCCGUAGCUCUaGuAGGCGGA---------CGGc -5'
22735 3' -57 NC_005091.1 + 55693 0.68 0.527347
Target:  5'- cCCGGCuugccgcaucacuUCGccGAUCG-CCGCCUGCaCGa -3'
miRNA:   3'- -GGCCGu------------AGCu-CUAGUaGGCGGACG-GC- -5'
22735 3' -57 NC_005091.1 + 52063 0.68 0.521157
Target:  5'- gCCGcGCGcuUCGAGAUauUCCGCCgcauuggcgcgGCCGu -3'
miRNA:   3'- -GGC-CGU--AGCUCUAguAGGCGGa----------CGGC- -5'
22735 3' -57 NC_005091.1 + 46042 0.68 0.518073
Target:  5'- gCGGCGggGAGAUCgauuacgacgacccGUUCGCC-GCCGa -3'
miRNA:   3'- gGCCGUagCUCUAG--------------UAGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 25655 0.68 0.510905
Target:  5'- gCUGGCcgCGcAGuUCuUCCGCCUGCa- -3'
miRNA:   3'- -GGCCGuaGC-UCuAGuAGGCGGACGgc -5'
22735 3' -57 NC_005091.1 + 39496 0.68 0.510905
Target:  5'- uUGGCAUgGGGAagacggUCAUCUGCCUcacGCUGc -3'
miRNA:   3'- gGCCGUAgCUCU------AGUAGGCGGA---CGGC- -5'
22735 3' -57 NC_005091.1 + 53555 0.69 0.49066
Target:  5'- gCGGUGUCG---UCuUCCGCUUGCCGc -3'
miRNA:   3'- gGCCGUAGCucuAGuAGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 1385 0.69 0.470795
Target:  5'- cCCGGCGU---GAUCGaCUGCUUGCCGc -3'
miRNA:   3'- -GGCCGUAgcuCUAGUaGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 5628 0.7 0.451348
Target:  5'- aCGGUAUUGAcGAgCGUCaggGCCUGCCu -3'
miRNA:   3'- gGCCGUAGCU-CUaGUAGg--CGGACGGc -5'
22735 3' -57 NC_005091.1 + 57332 0.7 0.451348
Target:  5'- gCCGGguUgCGGGAUgAUCgGCUUGuCCGg -3'
miRNA:   3'- -GGCCguA-GCUCUAgUAGgCGGAC-GGC- -5'
22735 3' -57 NC_005091.1 + 8366 0.7 0.451348
Target:  5'- aCCGGCAUau---UCAUCUGCCggGCCa -3'
miRNA:   3'- -GGCCGUAgcucuAGUAGGCGGa-CGGc -5'
22735 3' -57 NC_005091.1 + 44227 0.7 0.432349
Target:  5'- aCCGGCAUaCGccccGAUCAUCUGCUcgGCaCGg -3'
miRNA:   3'- -GGCCGUA-GCu---CUAGUAGGCGGa-CG-GC- -5'
22735 3' -57 NC_005091.1 + 18174 0.7 0.432349
Target:  5'- cUCGGCAUCGAGAacaUgAUCCuGCgC-GCCGg -3'
miRNA:   3'- -GGCCGUAGCUCU---AgUAGG-CG-GaCGGC- -5'
22735 3' -57 NC_005091.1 + 5074 0.7 0.423026
Target:  5'- aCCGGCcUCGGGGUUggCUGCCccUGCgGg -3'
miRNA:   3'- -GGCCGuAGCUCUAGuaGGCGG--ACGgC- -5'
22735 3' -57 NC_005091.1 + 16597 0.71 0.395797
Target:  5'- cUCGGUgcGUCGGGAaugccUCccugcgCCGCCUGCCa -3'
miRNA:   3'- -GGCCG--UAGCUCU-----AGua----GGCGGACGGc -5'
22735 3' -57 NC_005091.1 + 44612 0.72 0.336833
Target:  5'- uCCGGCuugaucgaggCGAGGUCuUCgGCCUuGCCGu -3'
miRNA:   3'- -GGCCGua--------GCUCUAGuAGgCGGA-CGGC- -5'
22735 3' -57 NC_005091.1 + 27799 0.72 0.321205
Target:  5'- gCCGGcCGUCGAGGUaCAcgcgcUCCGUC-GCCGa -3'
miRNA:   3'- -GGCC-GUAGCUCUA-GU-----AGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 49550 0.72 0.306126
Target:  5'- aCGGCcgcGUCGGGGgcgucuUCGUaCCGCCUGCgCGg -3'
miRNA:   3'- gGCCG---UAGCUCU------AGUA-GGCGGACG-GC- -5'
22735 3' -57 NC_005091.1 + 1542 0.73 0.291594
Target:  5'- gCCGGCcgCcGGAUCGUCCGgCUUGUCu -3'
miRNA:   3'- -GGCCGuaGcUCUAGUAGGC-GGACGGc -5'
22735 3' -57 NC_005091.1 + 33508 0.74 0.244992
Target:  5'- gCCGGCAUCGAuccgCAUCaCGgCUGCCu -3'
miRNA:   3'- -GGCCGUAGCUcua-GUAG-GCgGACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.