miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 5' -52.1 NC_005091.1 + 30484 0.66 0.892787
Target:  5'- uUCgGGGCuGGCuucUCAUCUGAAUCa- -3'
miRNA:   3'- -AGgCUCG-CCGcauAGUAGACUUAGgg -5'
22735 5' -52.1 NC_005091.1 + 7172 0.66 0.892787
Target:  5'- gCCGgcAGCGGCGgc-CGUCUcGAUgCCCu -3'
miRNA:   3'- aGGC--UCGCCGCauaGUAGAcUUA-GGG- -5'
22735 5' -52.1 NC_005091.1 + 22811 0.66 0.891333
Target:  5'- gCCG-GCGGCGgaacgagCUGGaauGUCCCu -3'
miRNA:   3'- aGGCuCGCCGCauagua-GACU---UAGGG- -5'
22735 5' -52.1 NC_005091.1 + 54996 0.66 0.869857
Target:  5'- gCCGGGCGGCccgccgGUAUCccgugCUGAcgaCCCc -3'
miRNA:   3'- aGGCUCGCCG------CAUAGua---GACUua-GGG- -5'
22735 5' -52.1 NC_005091.1 + 16865 0.67 0.852444
Target:  5'- gCCGAG-GGCGaucgcuaUAUCGUCgguaAGUCCCc -3'
miRNA:   3'- aGGCUCgCCGC-------AUAGUAGac--UUAGGG- -5'
22735 5' -52.1 NC_005091.1 + 43279 0.67 0.83579
Target:  5'- uUCC-AGCGGCGauUCgAUCUGGAUgCUa -3'
miRNA:   3'- -AGGcUCGCCGCauAG-UAGACUUAgGG- -5'
22735 5' -52.1 NC_005091.1 + 6642 0.67 0.826703
Target:  5'- cCCGAGCGcGCGc-UCGUCUGcuUCgCu -3'
miRNA:   3'- aGGCUCGC-CGCauAGUAGACuuAGgG- -5'
22735 5' -52.1 NC_005091.1 + 7748 0.68 0.812683
Target:  5'- aCCGAGCGGCGaaauggagauGUCCCg -3'
miRNA:   3'- aGGCUCGCCGCauaguagacuUAGGG- -5'
22735 5' -52.1 NC_005091.1 + 35069 0.68 0.788365
Target:  5'- cCCGuGCGGCGgcgGUCGUUccaaUGGccCCCu -3'
miRNA:   3'- aGGCuCGCCGCa--UAGUAG----ACUuaGGG- -5'
22735 5' -52.1 NC_005091.1 + 10561 0.68 0.788365
Target:  5'- --aGAGUgaaauGGCGUAUCucgGUCUGAAucagcUCCCg -3'
miRNA:   3'- aggCUCG-----CCGCAUAG---UAGACUU-----AGGG- -5'
22735 5' -52.1 NC_005091.1 + 8722 0.68 0.778337
Target:  5'- aCCGAGaaugccgGGUGcaugAUCGcCUGAAUCCCc -3'
miRNA:   3'- aGGCUCg------CCGCa---UAGUaGACUUAGGG- -5'
22735 5' -52.1 NC_005091.1 + 48615 0.69 0.747369
Target:  5'- cUCgGGGCGGC----CGUCgGggUCCCa -3'
miRNA:   3'- -AGgCUCGCCGcauaGUAGaCuuAGGG- -5'
22735 5' -52.1 NC_005091.1 + 32524 0.71 0.637035
Target:  5'- gUCUGAGCcuGCGUAUCGcgaacuuUCUGGcuguccAUCCCa -3'
miRNA:   3'- -AGGCUCGc-CGCAUAGU-------AGACU------UAGGG- -5'
22735 5' -52.1 NC_005091.1 + 15602 0.72 0.560642
Target:  5'- aUCUGAGCGGCGgccCGUC-GAAUUUCa -3'
miRNA:   3'- -AGGCUCGCCGCauaGUAGaCUUAGGG- -5'
22735 5' -52.1 NC_005091.1 + 54836 0.73 0.517445
Target:  5'- gUCCGGGCGGCGccAUCAgcccaaAAUCCCc -3'
miRNA:   3'- -AGGCUCGCCGCa-UAGUagac--UUAGGG- -5'
22735 5' -52.1 NC_005091.1 + 12985 0.75 0.425877
Target:  5'- gCCGAGCGGCGUAUUGcCUGccgCCa -3'
miRNA:   3'- aGGCUCGCCGCAUAGUaGACuuaGGg -5'
22735 5' -52.1 NC_005091.1 + 35539 0.75 0.397547
Target:  5'- cUCCGAGCGGCGUA-CGgacaagggaUGggUCgCCa -3'
miRNA:   3'- -AGGCUCGCCGCAUaGUag-------ACuuAG-GG- -5'
22735 5' -52.1 NC_005091.1 + 56238 1.12 0.001516
Target:  5'- gUCCGAGCGGCGUAUCAUCUGAAUCCCc -3'
miRNA:   3'- -AGGCUCGCCGCAUAGUAGACUUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.