miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22736 3' -54.1 NC_005091.1 + 57380 0.66 0.793959
Target:  5'- aAGCgGGCGGCcaugaaauccucuggAAUUGCgCGGUCaUGCAg -3'
miRNA:   3'- gUCG-CUGCCG---------------UUAACG-GCUAGcACGU- -5'
22736 3' -54.1 NC_005091.1 + 13068 0.66 0.790008
Target:  5'- uGGCGGCaGGCAAUacGCCGcUCG-GCc -3'
miRNA:   3'- gUCGCUG-CCGUUAa-CGGCuAGCaCGu -5'
22736 3' -54.1 NC_005091.1 + 56950 0.66 0.790008
Target:  5'- -uGCGAC-GCAGagcggGCCGGcCGUGCAc -3'
miRNA:   3'- guCGCUGcCGUUaa---CGGCUaGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 10222 0.66 0.789016
Target:  5'- gCGGCGcuCGGCGcgUGCCGGcguaacguccgucUCGcGCGc -3'
miRNA:   3'- -GUCGCu-GCCGUuaACGGCU-------------AGCaCGU- -5'
22736 3' -54.1 NC_005091.1 + 56909 0.66 0.769863
Target:  5'- --aCGAuCGGCAAUUGCCG-UCGcuggcUGCGc -3'
miRNA:   3'- gucGCU-GCCGUUAACGGCuAGC-----ACGU- -5'
22736 3' -54.1 NC_005091.1 + 46540 0.66 0.769863
Target:  5'- -cGCGACGGC--UUGUCGAgCGUcGCc -3'
miRNA:   3'- guCGCUGCCGuuAACGGCUaGCA-CGu -5'
22736 3' -54.1 NC_005091.1 + 25623 0.66 0.769863
Target:  5'- aAGCGcgaauGCGGCGGgcaGCCGAUCGccgaGCu -3'
miRNA:   3'- gUCGC-----UGCCGUUaa-CGGCUAGCa---CGu -5'
22736 3' -54.1 NC_005091.1 + 55611 0.66 0.75853
Target:  5'- uCGGCGaagugauGCGGCAA--GCCGGgaugacgaCGUGCAa -3'
miRNA:   3'- -GUCGC-------UGCCGUUaaCGGCUa-------GCACGU- -5'
22736 3' -54.1 NC_005091.1 + 41974 0.66 0.749138
Target:  5'- gUAGCGAagaGGacc-UGCCGA-CGUGCGg -3'
miRNA:   3'- -GUCGCUg--CCguuaACGGCUaGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 24318 0.66 0.749138
Target:  5'- gCGGCGAUaGGCug--GCCGucgaccGUCGUGCc -3'
miRNA:   3'- -GUCGCUG-CCGuuaaCGGC------UAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 37683 0.66 0.749138
Target:  5'- aCAuCGGCGGCAGgucUCGAUgGUGCAu -3'
miRNA:   3'- -GUcGCUGCCGUUaacGGCUAgCACGU- -5'
22736 3' -54.1 NC_005091.1 + 33329 0.67 0.738586
Target:  5'- gCAGCcgggucuuCGGCAA-UGCCGGUUGcUGCGu -3'
miRNA:   3'- -GUCGcu------GCCGUUaACGGCUAGC-ACGU- -5'
22736 3' -54.1 NC_005091.1 + 10120 0.67 0.734335
Target:  5'- cCAGCGccCGGCGAUgaacaacguggucGCCG-UCGUGCc -3'
miRNA:   3'- -GUCGCu-GCCGUUAa------------CGGCuAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 19932 0.67 0.727926
Target:  5'- -cGCccACGGCAGUgauaacGCCGuUCGUGCGa -3'
miRNA:   3'- guCGc-UGCCGUUAa-----CGGCuAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 18332 0.67 0.727926
Target:  5'- aCGGCGuaccCGGCAAUcccgacUGCCGAccUCGcgaUGCGc -3'
miRNA:   3'- -GUCGCu---GCCGUUA------ACGGCU--AGC---ACGU- -5'
22736 3' -54.1 NC_005091.1 + 51810 0.67 0.717168
Target:  5'- gGGCGuGCGGCuugcGCgCGAUUGUGUAc -3'
miRNA:   3'- gUCGC-UGCCGuuaaCG-GCUAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 26133 0.68 0.662321
Target:  5'- uCAGCGcgugcGCGGCGA--GCUGAUCGcGCu -3'
miRNA:   3'- -GUCGC-----UGCCGUUaaCGGCUAGCaCGu -5'
22736 3' -54.1 NC_005091.1 + 30884 0.68 0.644551
Target:  5'- aCAGCGACcaGGCGucgagGCCcaucgucagucgcguGAUCGUGCu -3'
miRNA:   3'- -GUCGCUG--CCGUuaa--CGG---------------CUAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 36799 0.69 0.617854
Target:  5'- uGGCGACGGCGA--GCCGuUCGaccucGCGu -3'
miRNA:   3'- gUCGCUGCCGUUaaCGGCuAGCa----CGU- -5'
22736 3' -54.1 NC_005091.1 + 9351 0.69 0.591229
Target:  5'- cCAGCGGCGaGCAGUcgaccauucgccgGCCGGUCGcccuucGCAg -3'
miRNA:   3'- -GUCGCUGC-CGUUAa------------CGGCUAGCa-----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.