miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22736 3' -54.1 NC_005091.1 + 56829 1.09 0.001357
Target:  5'- cCAGCGACGGCAAUUGCCGAUCGUGCAg -3'
miRNA:   3'- -GUCGCUGCCGUUAACGGCUAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 28459 0.81 0.120443
Target:  5'- gAGCGACGGCgAGUUGCCGAaguacaguucgccggUCGUGUu -3'
miRNA:   3'- gUCGCUGCCG-UUAACGGCU---------------AGCACGu -5'
22736 3' -54.1 NC_005091.1 + 54341 0.73 0.399325
Target:  5'- -cGCGAuCGGCAAcgcguuUUGCCcGUCGUGCu -3'
miRNA:   3'- guCGCU-GCCGUU------AACGGcUAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 19795 0.73 0.381082
Target:  5'- gAGCGuGauGCGAUUGCCGA-CGUGCGu -3'
miRNA:   3'- gUCGC-UgcCGUUAACGGCUaGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 44875 0.72 0.418116
Target:  5'- gGGCGGCGGCAAggcgGCCGAagGcacgaagGCAa -3'
miRNA:   3'- gUCGCUGCCGUUaa--CGGCUagCa------CGU- -5'
22736 3' -54.1 NC_005091.1 + 34258 0.72 0.447285
Target:  5'- -cGCG-CGGC-AUUGCCGAuaUCGUGUc -3'
miRNA:   3'- guCGCuGCCGuUAACGGCU--AGCACGu -5'
22736 3' -54.1 NC_005091.1 + 54251 0.71 0.498279
Target:  5'- gUAGCacGACgGGCAaaacgcGUUGCCGAUCGcGCGg -3'
miRNA:   3'- -GUCG--CUG-CCGU------UAACGGCUAGCaCGU- -5'
22736 3' -54.1 NC_005091.1 + 52794 0.7 0.540864
Target:  5'- -cGCGGCGGCGAUcagGCCGcacgCG-GCAg -3'
miRNA:   3'- guCGCUGCCGUUAa--CGGCua--GCaCGU- -5'
22736 3' -54.1 NC_005091.1 + 49881 0.7 0.551708
Target:  5'- gCGGCGAucgcauCGGCAGaaGCCGAUCGaGCc -3'
miRNA:   3'- -GUCGCU------GCCGUUaaCGGCUAGCaCGu -5'
22736 3' -54.1 NC_005091.1 + 15999 0.7 0.563711
Target:  5'- -uGCGACGGCuacaucggucagGCCGAcaagcgUCGUGCu -3'
miRNA:   3'- guCGCUGCCGuuaa--------CGGCU------AGCACGu -5'
22736 3' -54.1 NC_005091.1 + 44605 0.69 0.570288
Target:  5'- aGGCGACGGCAGcgacgGCCuguaauaucgucucGA-CGUGCAg -3'
miRNA:   3'- gUCGCUGCCGUUaa---CGG--------------CUaGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 15850 0.69 0.5846
Target:  5'- gGGCGuCGGCAugcguGUUGCCGAgc-UGCGg -3'
miRNA:   3'- gUCGCuGCCGU-----UAACGGCUagcACGU- -5'
22736 3' -54.1 NC_005091.1 + 9351 0.69 0.591229
Target:  5'- cCAGCGGCGaGCAGUcgaccauucgccgGCCGGUCGcccuucGCAg -3'
miRNA:   3'- -GUCGCUGC-CGUUAa------------CGGCUAGCa-----CGU- -5'
22736 3' -54.1 NC_005091.1 + 36799 0.69 0.617854
Target:  5'- uGGCGACGGCGA--GCCGuUCGaccucGCGu -3'
miRNA:   3'- gUCGCUGCCGUUaaCGGCuAGCa----CGU- -5'
22736 3' -54.1 NC_005091.1 + 30884 0.68 0.644551
Target:  5'- aCAGCGACcaGGCGucgagGCCcaucgucagucgcguGAUCGUGCu -3'
miRNA:   3'- -GUCGCUG--CCGUuaa--CGG---------------CUAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 26133 0.68 0.662321
Target:  5'- uCAGCGcgugcGCGGCGA--GCUGAUCGcGCu -3'
miRNA:   3'- -GUCGC-----UGCCGUUaaCGGCUAGCaCGu -5'
22736 3' -54.1 NC_005091.1 + 51810 0.67 0.717168
Target:  5'- gGGCGuGCGGCuugcGCgCGAUUGUGUAc -3'
miRNA:   3'- gUCGC-UGCCGuuaaCG-GCUAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 19932 0.67 0.727926
Target:  5'- -cGCccACGGCAGUgauaacGCCGuUCGUGCGa -3'
miRNA:   3'- guCGc-UGCCGUUAa-----CGGCuAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 18332 0.67 0.727926
Target:  5'- aCGGCGuaccCGGCAAUcccgacUGCCGAccUCGcgaUGCGc -3'
miRNA:   3'- -GUCGCu---GCCGUUA------ACGGCU--AGC---ACGU- -5'
22736 3' -54.1 NC_005091.1 + 33329 0.67 0.738586
Target:  5'- gCAGCcgggucuuCGGCAA-UGCCGGUUGcUGCGu -3'
miRNA:   3'- -GUCGcu------GCCGUUaACGGCUAGC-ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.