miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22736 5' -63.2 NC_005091.1 + 17932 0.66 0.340805
Target:  5'- cGUGCgguagACGGCCGGCgCGacgggUgUGCGUUc -3'
miRNA:   3'- uCACG-----UGCCGGCCGgGCg----AgACGCAG- -5'
22736 5' -63.2 NC_005091.1 + 48843 0.66 0.340805
Target:  5'- cGUGuCACGGCCuGCCgCGUgugGCGUg -3'
miRNA:   3'- uCAC-GUGCCGGcCGG-GCGagaCGCAg -5'
22736 5' -63.2 NC_005091.1 + 49806 0.66 0.320866
Target:  5'- --cGCACGGCCGacguGCCCcgcaugcagagcuacGCgcaaUGCGUCg -3'
miRNA:   3'- ucaCGUGCCGGC----CGGG---------------CGag--ACGCAG- -5'
22736 5' -63.2 NC_005091.1 + 12478 0.66 0.303248
Target:  5'- --cGCACGGUCGaGCuuGUccUCgaUGCGUCg -3'
miRNA:   3'- ucaCGUGCCGGC-CGggCG--AG--ACGCAG- -5'
22736 5' -63.2 NC_005091.1 + 12093 0.67 0.289142
Target:  5'- --cGCGCGaGCCgGGCCUGCUUgaugaUGCGg- -3'
miRNA:   3'- ucaCGUGC-CGG-CCGGGCGAG-----ACGCag -5'
22736 5' -63.2 NC_005091.1 + 8063 0.67 0.275556
Target:  5'- --cGUACGGCaCGaGCCCGCU-UGCGa- -3'
miRNA:   3'- ucaCGUGCCG-GC-CGGGCGAgACGCag -5'
22736 5' -63.2 NC_005091.1 + 50866 0.68 0.254263
Target:  5'- --cGCGCGccgagcguugccaaGCUGGCCCGCgaaCUGCGg- -3'
miRNA:   3'- ucaCGUGC--------------CGGCCGGGCGa--GACGCag -5'
22736 5' -63.2 NC_005091.1 + 375 0.68 0.243831
Target:  5'- cAGUGCGuCGaugcCCGGCuuGUUCUGCG-Cg -3'
miRNA:   3'- -UCACGU-GCc---GGCCGggCGAGACGCaG- -5'
22736 5' -63.2 NC_005091.1 + 57769 0.68 0.243831
Target:  5'- cAGUGCGuCGaugcCCGGCuuGUUCUGCG-Cg -3'
miRNA:   3'- -UCACGU-GCc---GGCCGggCGAGACGCaG- -5'
22736 5' -63.2 NC_005091.1 + 54961 0.69 0.215201
Target:  5'- --cGCGCGGCUGuCCCGUuuUCUGCGcCc -3'
miRNA:   3'- ucaCGUGCCGGCcGGGCG--AGACGCaG- -5'
22736 5' -63.2 NC_005091.1 + 40580 0.69 0.209833
Target:  5'- --aGCACGGCCGGUUucgacaucgugCGCaUCUGCGa- -3'
miRNA:   3'- ucaCGUGCCGGCCGG-----------GCG-AGACGCag -5'
22736 5' -63.2 NC_005091.1 + 48698 0.7 0.166541
Target:  5'- --cGCACGGCCGGCCaauGCggcaCUGCa-- -3'
miRNA:   3'- ucaCGUGCCGGCCGGg--CGa---GACGcag -5'
22736 5' -63.2 NC_005091.1 + 13830 0.71 0.153991
Target:  5'- cGUGCAgaacuucggcuCGGgCGGUUCGC-CUGCGUCu -3'
miRNA:   3'- uCACGU-----------GCCgGCCGGGCGaGACGCAG- -5'
22736 5' -63.2 NC_005091.1 + 34336 0.72 0.131784
Target:  5'- cAGUaGCccuGCGGCCGGCCgCGCUUgucguacugcacgccGCGUCg -3'
miRNA:   3'- -UCA-CG---UGCCGGCCGG-GCGAGa--------------CGCAG- -5'
22736 5' -63.2 NC_005091.1 + 30499 0.77 0.050581
Target:  5'- --gGCugGGCCgggaccaucagcGGCgCGCUCUGCGUCa -3'
miRNA:   3'- ucaCGugCCGG------------CCGgGCGAGACGCAG- -5'
22736 5' -63.2 NC_005091.1 + 56864 0.99 0.00104
Target:  5'- aAGUGCACGGCCGGCCCGCUCUG-GUCg -3'
miRNA:   3'- -UCACGUGCCGGCCGGGCGAGACgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.