Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 6495 | 0.71 | 0.233765 |
|
Target: 5'- -cGCaUCCGCauggUGCCGCCCGACUc -3' miRNA: 3'- guCGaAGGCGcugaGCGGCGGGCUGA- -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 12697 | 0.69 | 0.298895 |
|
Target: 5'- gCGGCUcuugUCCGUGAUgugUGCCGUCUGAUc -3' miRNA: 3'- -GUCGA----AGGCGCUGa--GCGGCGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 17324 | 0.68 | 0.355585 |
|
Target: 5'- gAGaCUUCCGCGuagcGCUgGCCguucagcuucagauuGCCCGGCg -3' miRNA: 3'- gUC-GAAGGCGC----UGAgCGG---------------CGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 3343 | 0.68 | 0.372151 |
|
Target: 5'- -uGCUUCCgGCGugUCccuuuucgaaggcauGCCGCUCGugUc -3' miRNA: 3'- guCGAAGG-CGCugAG---------------CGGCGGGCugA- -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 53581 | 0.67 | 0.385777 |
|
Target: 5'- cCAGCgcaaCCcCGGCgCGCCGUCCGAUUc -3' miRNA: 3'- -GUCGaa--GGcGCUGaGCGGCGGGCUGA- -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 44827 | 0.67 | 0.394459 |
|
Target: 5'- -uGCUUCCGCGAUU-GCCuCCgUGACUg -3' miRNA: 3'- guCGAAGGCGCUGAgCGGcGG-GCUGA- -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 16482 | 0.67 | 0.394459 |
|
Target: 5'- cCAGCcggaauucUUCCGCGcguacuGCUUGCCGUcugCCGGCg -3' miRNA: 3'- -GUCG--------AAGGCGC------UGAGCGGCG---GGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 468 | 0.67 | 0.412198 |
|
Target: 5'- uCAGCgcgCagGCGACaagcCGCCGUCCGAUg -3' miRNA: 3'- -GUCGaa-Gg-CGCUGa---GCGGCGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 57134 | 1.07 | 0.000459 |
|
Target: 5'- cCAGCUUCCGCGACUCGCCGCCCGACUg -3' miRNA: 3'- -GUCGAAGGCGCUGAGCGGCGGGCUGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home