miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22737 3' -60.5 NC_005091.1 + 18142 0.66 0.477956
Target:  5'- uCGGUcggCGCGAgcUUCGCgGCCCGGCg -3'
miRNA:   3'- -GUCGaagGCGCU--GAGCGgCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 468 0.67 0.412198
Target:  5'- uCAGCgcgCagGCGACaagcCGCCGUCCGAUg -3'
miRNA:   3'- -GUCGaa-Gg-CGCUGa---GCGGCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 9282 0.67 0.42125
Target:  5'- -uGCUcgCCGCuGGC-CGCCGaCCGGCUg -3'
miRNA:   3'- guCGAa-GGCG-CUGaGCGGCgGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 24532 0.66 0.430422
Target:  5'- uCGGg-UCCGCGAUgucguacaaGCCGCCgGACg -3'
miRNA:   3'- -GUCgaAGGCGCUGag-------CGGCGGgCUGa -5'
22737 3' -60.5 NC_005091.1 + 50420 0.66 0.449109
Target:  5'- aCAGCgaCCGUGAaaacUUCGCCGUUCGcACg -3'
miRNA:   3'- -GUCGaaGGCGCU----GAGCGGCGGGC-UGa -5'
22737 3' -60.5 NC_005091.1 + 50887 0.66 0.449109
Target:  5'- -uGCUUCgCGCGGCUauaGCCacacGCUCGAUg -3'
miRNA:   3'- guCGAAG-GCGCUGAg--CGG----CGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 6091 0.66 0.449109
Target:  5'- -cGCg-CCGCuucGGCUCGUCGCCCG-Ca -3'
miRNA:   3'- guCGaaGGCG---CUGAGCGGCGGGCuGa -5'
22737 3' -60.5 NC_005091.1 + 55315 0.66 0.468237
Target:  5'- aCAGCUUugccgcCCGCGuGCUCGC-GCUCGAa- -3'
miRNA:   3'- -GUCGAA------GGCGC-UGAGCGgCGGGCUga -5'
22737 3' -60.5 NC_005091.1 + 11310 0.66 0.474056
Target:  5'- gCGGCUUCaacgccuuguugaGCGGCU-GCCGCguUCGACUg -3'
miRNA:   3'- -GUCGAAGg------------CGCUGAgCGGCG--GGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 16482 0.67 0.394459
Target:  5'- cCAGCcggaauucUUCCGCGcguacuGCUUGCCGUcugCCGGCg -3'
miRNA:   3'- -GUCG--------AAGGCGC------UGAGCGGCG---GGCUGa -5'
22737 3' -60.5 NC_005091.1 + 44827 0.67 0.394459
Target:  5'- -uGCUUCCGCGAUU-GCCuCCgUGACUg -3'
miRNA:   3'- guCGAAGGCGCUGAgCGGcGG-GCUGA- -5'
22737 3' -60.5 NC_005091.1 + 53581 0.67 0.385777
Target:  5'- cCAGCgcaaCCcCGGCgCGCCGUCCGAUUc -3'
miRNA:   3'- -GUCGaa--GGcGCUGaGCGGCGGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 23260 0.78 0.074306
Target:  5'- cCAGCUcgccgacgcacUgCGCGACaUGCCGCCCGGCUg -3'
miRNA:   3'- -GUCGA-----------AgGCGCUGaGCGGCGGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 10342 0.73 0.176335
Target:  5'- gAGUacUgCGCGugUCGCgCGCCCGACa -3'
miRNA:   3'- gUCGa-AgGCGCugAGCG-GCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 42344 0.72 0.180518
Target:  5'- gUAGCccUCgGCGAgcgcuucCUCGCCGUCCGACa -3'
miRNA:   3'- -GUCGa-AGgCGCU-------GAGCGGCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 43061 0.71 0.222264
Target:  5'- cCAGCUucucccgcgugUCUGCGACaggagccaaggUCGCCuuGCCCGGCg -3'
miRNA:   3'- -GUCGA-----------AGGCGCUG-----------AGCGG--CGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 6495 0.71 0.233765
Target:  5'- -cGCaUCCGCauggUGCCGCCCGACUc -3'
miRNA:   3'- guCGaAGGCGcugaGCGGCGGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 12697 0.69 0.298895
Target:  5'- gCGGCUcuugUCCGUGAUgugUGCCGUCUGAUc -3'
miRNA:   3'- -GUCGA----AGGCGCUGa--GCGGCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 17324 0.68 0.355585
Target:  5'- gAGaCUUCCGCGuagcGCUgGCCguucagcuucagauuGCCCGGCg -3'
miRNA:   3'- gUC-GAAGGCGC----UGAgCGG---------------CGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 3343 0.68 0.372151
Target:  5'- -uGCUUCCgGCGugUCccuuuucgaaggcauGCCGCUCGugUc -3'
miRNA:   3'- guCGAAGG-CGCugAG---------------CGGCGGGCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.