Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 50887 | 0.66 | 0.449109 |
|
Target: 5'- -uGCUUCgCGCGGCUauaGCCacacGCUCGAUg -3' miRNA: 3'- guCGAAG-GCGCUGAg--CGG----CGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 6091 | 0.66 | 0.449109 |
|
Target: 5'- -cGCg-CCGCuucGGCUCGUCGCCCG-Ca -3' miRNA: 3'- guCGaaGGCG---CUGAGCGGCGGGCuGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 55315 | 0.66 | 0.468237 |
|
Target: 5'- aCAGCUUugccgcCCGCGuGCUCGC-GCUCGAa- -3' miRNA: 3'- -GUCGAA------GGCGC-UGAGCGgCGGGCUga -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 11310 | 0.66 | 0.474056 |
|
Target: 5'- gCGGCUUCaacgccuuguugaGCGGCU-GCCGCguUCGACUg -3' miRNA: 3'- -GUCGAAGg------------CGCUGAgCGGCG--GGCUGA- -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 18142 | 0.66 | 0.477956 |
|
Target: 5'- uCGGUcggCGCGAgcUUCGCgGCCCGGCg -3' miRNA: 3'- -GUCGaagGCGCU--GAGCGgCGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 4301 | 0.66 | 0.477956 |
|
Target: 5'- aCGGCa-CgGUGACgggcgCGCCGCCgGGCa -3' miRNA: 3'- -GUCGaaGgCGCUGa----GCGGCGGgCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 22994 | 0.66 | 0.468237 |
|
Target: 5'- uGGuCUUCCGCGAC-CGaaugGUCCGGCg -3' miRNA: 3'- gUC-GAAGGCGCUGaGCgg--CGGGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 37026 | 0.66 | 0.430422 |
|
Target: 5'- uCAGCagcCCGCGACUUcuCCGUgCGACg -3' miRNA: 3'- -GUCGaa-GGCGCUGAGc-GGCGgGCUGa -5' |
|||||||
| 22737 | 3' | -60.5 | NC_005091.1 | + | 24532 | 0.66 | 0.430422 |
|
Target: 5'- uCGGg-UCCGCGAUgucguacaaGCCGCCgGACg -3' miRNA: 3'- -GUCgaAGGCGCUGag-------CGGCGGgCUGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home