miRNA display CGI


Results 21 - 29 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22737 3' -60.5 NC_005091.1 + 12697 0.69 0.298895
Target:  5'- gCGGCUcuugUCCGUGAUgugUGCCGUCUGAUc -3'
miRNA:   3'- -GUCGA----AGGCGCUGa--GCGGCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 30187 0.7 0.27799
Target:  5'- aAGCauggUCgGCGACuUCGCCGCCCu--- -3'
miRNA:   3'- gUCGa---AGgCGCUG-AGCGGCGGGcuga -5'
22737 3' -60.5 NC_005091.1 + 19002 0.71 0.239701
Target:  5'- cCAGCaagugaaUCCGCGACUgGCCGCgaugcUCGGCg -3'
miRNA:   3'- -GUCGa------AGGCGCUGAgCGGCG-----GGCUGa -5'
22737 3' -60.5 NC_005091.1 + 6495 0.71 0.233765
Target:  5'- -cGCaUCCGCauggUGCCGCCCGACUc -3'
miRNA:   3'- guCGaAGGCGcugaGCGGCGGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 43061 0.71 0.222264
Target:  5'- cCAGCUucucccgcgugUCUGCGACaggagccaaggUCGCCuuGCCCGGCg -3'
miRNA:   3'- -GUCGA-----------AGGCGCUG-----------AGCGG--CGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 42344 0.72 0.180518
Target:  5'- gUAGCccUCgGCGAgcgcuucCUCGCCGUCCGACa -3'
miRNA:   3'- -GUCGa-AGgCGCU-------GAGCGGCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 10342 0.73 0.176335
Target:  5'- gAGUacUgCGCGugUCGCgCGCCCGACa -3'
miRNA:   3'- gUCGa-AgGCGCugAGCG-GCGGGCUGa -5'
22737 3' -60.5 NC_005091.1 + 23260 0.78 0.074306
Target:  5'- cCAGCUcgccgacgcacUgCGCGACaUGCCGCCCGGCUg -3'
miRNA:   3'- -GUCGA-----------AgGCGCUGaGCGGCGGGCUGA- -5'
22737 3' -60.5 NC_005091.1 + 57134 1.07 0.000459
Target:  5'- cCAGCUUCCGCGACUCGCCGCCCGACUg -3'
miRNA:   3'- -GUCGAAGGCGCUGAGCGGCGGGCUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.