miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22737 5' -54.8 NC_005091.1 + 57169 1.12 0.00071
Target:  5'- uGGAAUGGGGCGGCGAAGACGCUGUUCa -3'
miRNA:   3'- -CCUUACCCCGCCGCUUCUGCGACAAG- -5'
22737 5' -54.8 NC_005091.1 + 37432 0.69 0.572247
Target:  5'- aGGaAGUGGcGaCGGCGAGGACGgaGUa- -3'
miRNA:   3'- -CC-UUACCcC-GCCGCUUCUGCgaCAag -5'
22737 5' -54.8 NC_005091.1 + 16412 0.69 0.583131
Target:  5'- ----gGGGGCGGCGGgauuccGGACGCa---- -3'
miRNA:   3'- ccuuaCCCCGCCGCU------UCUGCGacaag -5'
22737 5' -54.8 NC_005091.1 + 29478 0.69 0.594056
Target:  5'- cGAAccGGGCGaGCGAcguaGGACGCUGg-- -3'
miRNA:   3'- cCUUacCCCGC-CGCU----UCUGCGACaag -5'
22737 5' -54.8 NC_005091.1 + 48966 0.68 0.605013
Target:  5'- aGGAuUGGGGCuuGGCGGGcGCGCUa--- -3'
miRNA:   3'- -CCUuACCCCG--CCGCUUcUGCGAcaag -5'
22737 5' -54.8 NC_005091.1 + 6024 0.68 0.659958
Target:  5'- ----cGaGGGCGGCGcGGACGUUcgggcGUUCg -3'
miRNA:   3'- ccuuaC-CCCGCCGCuUCUGCGA-----CAAG- -5'
22737 5' -54.8 NC_005091.1 + 34969 0.67 0.68944
Target:  5'- cGGAAcagucggcuucgcuUGGcGGCGGCGGacuugaAGGCGCg--UCg -3'
miRNA:   3'- -CCUU--------------ACC-CCGCCGCU------UCUGCGacaAG- -5'
22737 5' -54.8 NC_005091.1 + 24585 0.67 0.702428
Target:  5'- ----cGGGGCGGCGucguugcAAGGCGCg---- -3'
miRNA:   3'- ccuuaCCCCGCCGC-------UUCUGCGacaag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.