Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22739 | 3' | -53.3 | NC_005091.1 | + | 26028 | 0.66 | 0.843243 |
Target: 5'- cCGACGUACgcc---GUGGCgaGCGCGa -3' miRNA: 3'- -GCUGCGUGacuuucUACCGgaCGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 17465 | 0.66 | 0.83343 |
Target: 5'- aCGGCGauuugcauuccuuCGCUGAAcucGGAcgGGUCUGCGCc -3' miRNA: 3'- -GCUGC-------------GUGACUU---UCUa-CCGGACGUGc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 8229 | 0.66 | 0.825205 |
Target: 5'- gGACGUGCUGAucGcgGuaCUGgGCGg -3' miRNA: 3'- gCUGCGUGACUuuCuaCcgGACgUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 11855 | 0.66 | 0.825205 |
Target: 5'- aGAUGC--UGAAGGAcUGGCC-GCACu -3' miRNA: 3'- gCUGCGugACUUUCU-ACCGGaCGUGc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 53529 | 0.66 | 0.825205 |
Target: 5'- gGGCGCGgcuuuCUGGcGGGAUGGUCuaagggcgaaUGCACGg -3' miRNA: 3'- gCUGCGU-----GACU-UUCUACCGG----------ACGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 32569 | 0.66 | 0.815868 |
Target: 5'- aCGAUGCGCUGAAccucgGGCUgauUGaCGCGg -3' miRNA: 3'- -GCUGCGUGACUUucua-CCGG---AC-GUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 4163 | 0.66 | 0.814924 |
Target: 5'- aGcCGUcaggucgGCUGGGAGAUGGCCga-GCGg -3' miRNA: 3'- gCuGCG-------UGACUUUCUACCGGacgUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 24276 | 0.66 | 0.806334 |
Target: 5'- aCGACGUGCUGAAAGA--GCgaGCGg- -3' miRNA: 3'- -GCUGCGUGACUUUCUacCGgaCGUgc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 3357 | 0.67 | 0.786716 |
Target: 5'- --uCGCACUGAAGGccGGUgUGCAa- -3' miRNA: 3'- gcuGCGUGACUUUCuaCCGgACGUgc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 34057 | 0.67 | 0.766438 |
Target: 5'- gGACGCGCUGAAGGcguacGUcGGCg-GUGCGa -3' miRNA: 3'- gCUGCGUGACUUUC-----UA-CCGgaCGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 28269 | 0.67 | 0.745595 |
Target: 5'- gCGACGCGCUGGc----GGCUUGCGUGa -3' miRNA: 3'- -GCUGCGUGACUuucuaCCGGACGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 8761 | 0.68 | 0.691632 |
Target: 5'- aCGAgUGCACUGAAcagcgugccccGGAU-GUCUGCGCGc -3' miRNA: 3'- -GCU-GCGUGACUU-----------UCUAcCGGACGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 31792 | 0.69 | 0.636192 |
Target: 5'- uCGGCGCAgccGAAGgcGGCCgGCGCGg -3' miRNA: 3'- -GCUGCGUgacUUUCuaCCGGaCGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 56949 | 0.7 | 0.613915 |
Target: 5'- gCGACGCAgaGcgGGccGGCCgUGCACu -3' miRNA: 3'- -GCUGCGUgaCuuUCuaCCGG-ACGUGc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 28696 | 0.71 | 0.56414 |
Target: 5'- gGGCGCACgacacacgccggGGCCUGCGCGc -3' miRNA: 3'- gCUGCGUGacuuucua----CCGGACGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 2065 | 0.71 | 0.536929 |
Target: 5'- uCGACGCACUGGucgaacAGAUuacccGUCUGCACa -3' miRNA: 3'- -GCUGCGUGACUu-----UCUAc----CGGACGUGc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 23499 | 0.71 | 0.526169 |
Target: 5'- gCGACGCGCgcggcGAUGGCgCUGCuCGg -3' miRNA: 3'- -GCUGCGUGacuuuCUACCG-GACGuGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 38050 | 0.72 | 0.504904 |
Target: 5'- aGACGCACgaAGAGAUcGuCCUGCGCGu -3' miRNA: 3'- gCUGCGUGacUUUCUAcC-GGACGUGC- -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 37125 | 0.72 | 0.47373 |
Target: 5'- cCGGCGCAgUGcggGAAGAcugaUGGCCUGCuACu -3' miRNA: 3'- -GCUGCGUgAC---UUUCU----ACCGGACG-UGc -5' |
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22739 | 3' | -53.3 | NC_005091.1 | + | 29245 | 0.75 | 0.326584 |
Target: 5'- uGACGCACUGGccGAUGaauuCCUGCGCc -3' miRNA: 3'- gCUGCGUGACUuuCUACc---GGACGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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