miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22739 5' -52.5 NC_005091.1 + 6673 0.66 0.868019
Target:  5'- gCGCGaGC-GAUCAUCGACuucGCGAUGUc -3'
miRNA:   3'- -GCGCaCGaCUGGUAGUUGc--CGUUACA- -5'
22739 5' -52.5 NC_005091.1 + 16028 0.66 0.85972
Target:  5'- gCGuCGUGCUGccGCCGgcCGGCGGCAc--- -3'
miRNA:   3'- -GC-GCACGAC--UGGUa-GUUGCCGUuaca -5'
22739 5' -52.5 NC_005091.1 + 9550 0.66 0.851173
Target:  5'- cCGUGacgagGCUGccgugucggcaGCCAUCAACGGCGc--- -3'
miRNA:   3'- -GCGCa----CGAC-----------UGGUAGUUGCCGUuaca -5'
22739 5' -52.5 NC_005091.1 + 3564 0.67 0.80503
Target:  5'- aCGCGaaccUGCgcaaGAUgGUCAACGGCAAa-- -3'
miRNA:   3'- -GCGC----ACGa---CUGgUAGUUGCCGUUaca -5'
22739 5' -52.5 NC_005091.1 + 23309 0.67 0.785173
Target:  5'- aCGCGccgcGCU-ACCA-CAGCGGCAcgGUa -3'
miRNA:   3'- -GCGCa---CGAcUGGUaGUUGCCGUuaCA- -5'
22739 5' -52.5 NC_005091.1 + 50041 0.67 0.785173
Target:  5'- aCGCGUGCcggccUGACCGUCGAacaGGUu---- -3'
miRNA:   3'- -GCGCACG-----ACUGGUAGUUg--CCGuuaca -5'
22739 5' -52.5 NC_005091.1 + 56754 0.67 0.785173
Target:  5'- uCGCGUGCUGguaUAUCGGCGaGCAu--- -3'
miRNA:   3'- -GCGCACGACug-GUAGUUGC-CGUuaca -5'
22739 5' -52.5 NC_005091.1 + 15256 0.68 0.774991
Target:  5'- gCGCGUGUaccguUGGCCGUCcGugGGCGc--- -3'
miRNA:   3'- -GCGCACG-----ACUGGUAG-UugCCGUuaca -5'
22739 5' -52.5 NC_005091.1 + 3451 0.68 0.774991
Target:  5'- -cCGUGCUGACCcgGUCGAacUGGCAGa-- -3'
miRNA:   3'- gcGCACGACUGG--UAGUU--GCCGUUaca -5'
22739 5' -52.5 NC_005091.1 + 17071 0.68 0.764653
Target:  5'- gCGCGUGCUcucGACC-UCGGCGcGaAGUGUa -3'
miRNA:   3'- -GCGCACGA---CUGGuAGUUGC-CgUUACA- -5'
22739 5' -52.5 NC_005091.1 + 46481 0.68 0.763612
Target:  5'- gCGCGaGCUGAUgGUCAcauucguACGGCAGg-- -3'
miRNA:   3'- -GCGCaCGACUGgUAGU-------UGCCGUUaca -5'
22739 5' -52.5 NC_005091.1 + 27878 0.68 0.743564
Target:  5'- gCGCGUGU--ACC-UCGACGGCcggccGAUGUa -3'
miRNA:   3'- -GCGCACGacUGGuAGUUGCCG-----UUACA- -5'
22739 5' -52.5 NC_005091.1 + 31285 0.68 0.732837
Target:  5'- gGCGagcaGCcGAUCAUCGGCGGCA-UGUc -3'
miRNA:   3'- gCGCa---CGaCUGGUAGUUGCCGUuACA- -5'
22739 5' -52.5 NC_005091.1 + 24316 0.68 0.732837
Target:  5'- uCGCGgcgauagGCUGGCCGUCGACcGUcGUGc -3'
miRNA:   3'- -GCGCa------CGACUGGUAGUUGcCGuUACa -5'
22739 5' -52.5 NC_005091.1 + 56809 0.68 0.732837
Target:  5'- gGCGUgGCUGcaccgcgcaGCCAgCGACGGCAAUu- -3'
miRNA:   3'- gCGCA-CGAC---------UGGUaGUUGCCGUUAca -5'
22739 5' -52.5 NC_005091.1 + 7723 0.69 0.711079
Target:  5'- uCGUGacGCUGACCAUgCAgaGCGGCAAc-- -3'
miRNA:   3'- -GCGCa-CGACUGGUA-GU--UGCCGUUaca -5'
22739 5' -52.5 NC_005091.1 + 13817 0.69 0.666685
Target:  5'- gCGuCGUGCUGACCGUCAcGCuGCGcccgcugaacGUGUu -3'
miRNA:   3'- -GC-GCACGACUGGUAGU-UGcCGU----------UACA- -5'
22739 5' -52.5 NC_005091.1 + 50817 0.69 0.666685
Target:  5'- aGCGUGC-GGCCGUCGugcgcGCGGCu---- -3'
miRNA:   3'- gCGCACGaCUGGUAGU-----UGCCGuuaca -5'
22739 5' -52.5 NC_005091.1 + 10420 0.71 0.576952
Target:  5'- aGgG-GCUGACCGUgAGCGGCcgcAUGUg -3'
miRNA:   3'- gCgCaCGACUGGUAgUUGCCGu--UACA- -5'
22739 5' -52.5 NC_005091.1 + 30492 0.71 0.575839
Target:  5'- aGCGUucgGCUgggccggGACCAUCAGCGGCGc--- -3'
miRNA:   3'- gCGCA---CGA-------CUGGUAGUUGCCGUuaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.