Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2274 | 3' | -56.2 | NC_001405.1 | + | 11314 | 0.68 | 0.438292 |
Target: 5'- --aGCUGCaCCcuugGGUGUcGCuCAGGAGAGg -3' miRNA: 3'- gggCGACG-GGa---CCACA-UG-GUCCUUUC- -5' |
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2274 | 3' | -56.2 | NC_001405.1 | + | 3180 | 0.68 | 0.409088 |
Target: 5'- aCCCGCUGUUCcuugcauuUGG-GUAaCAGGAGGGg -3' miRNA: 3'- -GGGCGACGGG--------ACCaCAUgGUCCUUUC- -5' |
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2274 | 3' | -56.2 | NC_001405.1 | + | 12124 | 0.69 | 0.390305 |
Target: 5'- gCCGCUGCCC--GUGccaGCCAGGGc-- -3' miRNA: 3'- gGGCGACGGGacCACa--UGGUCCUuuc -5' |
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2274 | 3' | -56.2 | NC_001405.1 | + | 6615 | 0.69 | 0.381127 |
Target: 5'- gCCUGCUGCCCggGGUcuuUACCGuGGAc-- -3' miRNA: 3'- -GGGCGACGGGa-CCAc--AUGGU-CCUuuc -5' |
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2274 | 3' | -56.2 | NC_001405.1 | + | 901 | 0.73 | 0.205384 |
Target: 5'- uCCgGCUGCUCgGGc-UGCCGGGAAAGg -3' miRNA: 3'- -GGgCGACGGGaCCacAUGGUCCUUUC- -5' |
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2274 | 3' | -56.2 | NC_001405.1 | + | 27409 | 1.1 | 0.000403 |
Target: 5'- gCCCGCUGCCCUGGUGUACCAGGAAAGu -3' miRNA: 3'- -GGGCGACGGGACCACAUGGUCCUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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