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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22742 | 3' | -47.2 | NC_005092.1 | + | 1289 | 0.66 | 0.610436 |
Target: 5'- -----uCUGUAuaaUGGAUCGGCGGCg -3' miRNA: 3'- gaacucGACAUugaACUUAGCCGUCG- -5' |
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22742 | 3' | -47.2 | NC_005092.1 | + | 2198 | 0.7 | 0.408837 |
Target: 5'- --gGAGUgucuggUGUAGCgaaugGAAUUGGUAGCa -3' miRNA: 3'- gaaCUCG------ACAUUGaa---CUUAGCCGUCG- -5' |
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22742 | 3' | -47.2 | NC_005092.1 | + | 1360 | 1.14 | 0.000275 |
Target: 5'- cCUUGAGCUGUAACUUGAAUCGGCAGCu -3' miRNA: 3'- -GAACUCGACAUUGAACUUAGCCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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