Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2275 | 3' | -50.6 | NC_001405.1 | + | 33605 | 1.13 | 0.000859 |
Target: 5'- aUCCUAAACCAGCUGGCCAAAACCUGCc -3' miRNA: 3'- -AGGAUUUGGUCGACCGGUUUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 12633 | 0.82 | 0.119699 |
Target: 5'- aCCUGGACCGGCUGGUgggggaugugcgCGAGGCCgugGCg -3' miRNA: 3'- aGGAUUUGGUCGACCG------------GUUUUGGa--CG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 6994 | 0.77 | 0.25542 |
Target: 5'- gCUUGuuGACCAGCUcGGCgGuGACCUGCa -3' miRNA: 3'- aGGAU--UUGGUCGA-CCGgUuUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 34861 | 0.76 | 0.277403 |
Target: 5'- uUCCUGgcggggaaguGGCCGcGCUGGuCCGugcAGACCUGCa -3' miRNA: 3'- -AGGAU----------UUGGU-CGACC-GGU---UUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 1238 | 0.74 | 0.380277 |
Target: 5'- aCCUGAGCCugAGCccGaGCCAGAaccggaGCCUGCa -3' miRNA: 3'- aGGAUUUGG--UCGa-C-CGGUUU------UGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 21238 | 0.74 | 0.389922 |
Target: 5'- cCCUGguAGCCaauauuguAGUUGGCCAAcAUCUGCa -3' miRNA: 3'- aGGAU--UUGG--------UCGACCGGUUuUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 22800 | 0.73 | 0.399726 |
Target: 5'- cUCCgacaaGAGCguGCUGGCCA--GCgUGCa -3' miRNA: 3'- -AGGa----UUUGguCGACCGGUuuUGgACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 21034 | 0.73 | 0.4198 |
Target: 5'- aCCUuuGACUcuucuguuAGCUGGCCGGGcaacgaccGCCUGCu -3' miRNA: 3'- aGGAu-UUGG--------UCGACCGGUUU--------UGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 18887 | 0.72 | 0.472529 |
Target: 5'- aCCUGAGCCccgGGCUGGUgCAGuuuGCCcGCg -3' miRNA: 3'- aGGAUUUGG---UCGACCG-GUUu--UGGaCG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 7067 | 0.7 | 0.571258 |
Target: 5'- cCCUAGacgugcaggucaccGCCgAGCUGGUCAAcAAgCUGCg -3' miRNA: 3'- aGGAUU--------------UGG-UCGACCGGUU-UUgGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 15864 | 0.7 | 0.598329 |
Target: 5'- aUCCUuauaucgcCCAGCaauaacacaGGCUggGGCCUGCg -3' miRNA: 3'- -AGGAuuu-----GGUCGa--------CCGGuuUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 671 | 0.7 | 0.610163 |
Target: 5'- cUCUUcGAUCAGCUGGuCCAAaaGACUgGCg -3' miRNA: 3'- -AGGAuUUGGUCGACC-GGUU--UUGGaCG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 8455 | 0.7 | 0.610163 |
Target: 5'- cCCUGAcCCGGCUaugcgaGGU--AAACCUGCa -3' miRNA: 3'- aGGAUUuGGUCGA------CCGguUUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 12860 | 0.69 | 0.622018 |
Target: 5'- uUCC-AGACCAGUaga-CAAGGCCUGCa -3' miRNA: 3'- -AGGaUUUGGUCGaccgGUUUUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 12493 | 0.69 | 0.645747 |
Target: 5'- ---aGAGCCGGUUGGCCugcGgCUGCu -3' miRNA: 3'- aggaUUUGGUCGACCGGuuuUgGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 9927 | 0.69 | 0.645747 |
Target: 5'- ---gAAGCCuggGGCaUGGCCGAccGCCUGCg -3' miRNA: 3'- aggaUUUGG---UCG-ACCGGUUu-UGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 29356 | 0.69 | 0.655228 |
Target: 5'- uUCCUGGACguUAGCgccugauuucuGCCAGcGCCUGCa -3' miRNA: 3'- -AGGAUUUG--GUCGac---------CGGUUuUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 18154 | 0.69 | 0.657597 |
Target: 5'- gCCUGGAacagCAGCacaGGCCAGAugCUGa -3' miRNA: 3'- aGGAUUUg---GUCGa--CCGGUUUugGACg -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 13193 | 0.68 | 0.704585 |
Target: 5'- cUCCUGccCCAGCgcgcGGCUGAcACUUGUa -3' miRNA: 3'- -AGGAUuuGGUCGa---CCGGUUuUGGACG- -5' |
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2275 | 3' | -50.6 | NC_001405.1 | + | 12894 | 0.68 | 0.704585 |
Target: 5'- aCCUGAGCCA---GGCUuucaAGAACUUGCa -3' miRNA: 3'- aGGAUUUGGUcgaCCGG----UUUUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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