miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2275 3' -50.6 NC_001405.1 + 7067 0.7 0.571258
Target:  5'- cCCUAGacgugcaggucaccGCCgAGCUGGUCAAcAAgCUGCg -3'
miRNA:   3'- aGGAUU--------------UGG-UCGACCGGUU-UUgGACG- -5'
2275 3' -50.6 NC_001405.1 + 18887 0.72 0.472529
Target:  5'- aCCUGAGCCccgGGCUGGUgCAGuuuGCCcGCg -3'
miRNA:   3'- aGGAUUUGG---UCGACCG-GUUu--UGGaCG- -5'
2275 3' -50.6 NC_001405.1 + 21034 0.73 0.4198
Target:  5'- aCCUuuGACUcuucuguuAGCUGGCCGGGcaacgaccGCCUGCu -3'
miRNA:   3'- aGGAu-UUGG--------UCGACCGGUUU--------UGGACG- -5'
2275 3' -50.6 NC_001405.1 + 22800 0.73 0.399726
Target:  5'- cUCCgacaaGAGCguGCUGGCCA--GCgUGCa -3'
miRNA:   3'- -AGGa----UUUGguCGACCGGUuuUGgACG- -5'
2275 3' -50.6 NC_001405.1 + 21238 0.74 0.389922
Target:  5'- cCCUGguAGCCaauauuguAGUUGGCCAAcAUCUGCa -3'
miRNA:   3'- aGGAU--UUGG--------UCGACCGGUUuUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 1238 0.74 0.380277
Target:  5'- aCCUGAGCCugAGCccGaGCCAGAaccggaGCCUGCa -3'
miRNA:   3'- aGGAUUUGG--UCGa-C-CGGUUU------UGGACG- -5'
2275 3' -50.6 NC_001405.1 + 34861 0.76 0.277403
Target:  5'- uUCCUGgcggggaaguGGCCGcGCUGGuCCGugcAGACCUGCa -3'
miRNA:   3'- -AGGAU----------UUGGU-CGACC-GGU---UUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 6994 0.77 0.25542
Target:  5'- gCUUGuuGACCAGCUcGGCgGuGACCUGCa -3'
miRNA:   3'- aGGAU--UUGGUCGA-CCGgUuUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 12633 0.82 0.119699
Target:  5'- aCCUGGACCGGCUGGUgggggaugugcgCGAGGCCgugGCg -3'
miRNA:   3'- aGGAUUUGGUCGACCG------------GUUUUGGa--CG- -5'
2275 3' -50.6 NC_001405.1 + 33605 1.13 0.000859
Target:  5'- aUCCUAAACCAGCUGGCCAAAACCUGCc -3'
miRNA:   3'- -AGGAUUUGGUCGACCGGUUUUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.