miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2276 3' -53.7 NC_001405.1 + 16600 0.66 0.711333
Target:  5'- --gCAGGAUUACAAGCcCCgaaagCUaaaGCGg -3'
miRNA:   3'- ggaGUCCUAAUGUUCGaGGa----GGg--CGC- -5'
2276 3' -53.7 NC_001405.1 + 3880 0.66 0.666242
Target:  5'- gCUCAGGAaaGCaAAGUcagUCacaaUCCCGCGg -3'
miRNA:   3'- gGAGUCCUaaUG-UUCG---AGg---AGGGCGC- -5'
2276 3' -53.7 NC_001405.1 + 12925 0.67 0.64344
Target:  5'- gCUguGGGgggUGCGGGCUCCcacaggcgaCCGCGc -3'
miRNA:   3'- gGAguCCUa--AUGUUCGAGGag-------GGCGC- -5'
2276 3' -53.7 NC_001405.1 + 2248 0.67 0.632017
Target:  5'- cUCUCGGGuuccauggGCucuGCUCCUgCCGCc -3'
miRNA:   3'- -GGAGUCCuaa-----UGuu-CGAGGAgGGCGc -5'
2276 3' -53.7 NC_001405.1 + 11295 0.69 0.49777
Target:  5'- gCUCAGGAgaggGC--GCUCCUagCCGCGc -3'
miRNA:   3'- gGAGUCCUaa--UGuuCGAGGAg-GGCGC- -5'
2276 3' -53.7 NC_001405.1 + 13223 0.7 0.425431
Target:  5'- gUUCAGGGUUGCcuccAGGCugcccgugUCCUCCUGCc -3'
miRNA:   3'- gGAGUCCUAAUG----UUCG--------AGGAGGGCGc -5'
2276 3' -53.7 NC_001405.1 + 15279 0.71 0.414638
Target:  5'- aCCUCGGG-UUGCGcagcgggggcggcAGCUUCUgCCGCu -3'
miRNA:   3'- -GGAGUCCuAAUGU-------------UCGAGGAgGGCGc -5'
2276 3' -53.7 NC_001405.1 + 33762 1.1 0.00072
Target:  5'- uCCUCAGGAUUACAAGCUCCUCCCGCGu -3'
miRNA:   3'- -GGAGUCCUAAUGUUCGAGGAGGGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.