miRNA: 3'- gGGUCCCU-----UGUUG--GGUAA--GGACUUAG- -5'
miRNA: 3'- -GGG--UCCCUUG--UUGGGUA-AGGACUuag -5'
miRNA: 3'- gGGUcCCUUGUUGGGu-----AAGGACUUag -5'
miRNA: 3'- -GGGUCCcuUGUUGGGUaaGGACuUAG- -5'
miRNA: 3'- -GGGUCCCUUGUUGGGUAAGGACUUAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2276 | 5' | -50.5 | NC_001405.1 | + | 14281 | 0.66 | 0.846596 |
|
Target: 5'- aCCGGGGGgagaaACAGCauCCGUUacUCUGAGUUg -3' miRNA: 3'- gGGUCCCU-----UGUUG--GGUAA--GGACUUAG- -5' |
|||||||
| 2276 | 5' | -50.5 | NC_001405.1 | + | 7608 | 0.66 | 0.82775 |
|
Target: 5'- uCCUcaGGGGAGCugAGCCCGUgUUCUGAc-- -3' miRNA: 3'- -GGG--UCCCUUG--UUGGGUA-AGGACUuag -5' |
|||||||
| 2276 | 5' | -50.5 | NC_001405.1 | + | 22264 | 0.67 | 0.797756 |
|
Target: 5'- aCCA-GGAACAGCUCuacagcUUCCUGGAg- -3' miRNA: 3'- gGGUcCCUUGUUGGGu-----AAGGACUUag -5' |
|||||||
| 2276 | 5' | -50.5 | NC_001405.1 | + | 22236 | 0.73 | 0.448166 |
|
Target: 5'- cCCCAGGu-ACAGCCCAc-CCUGcGUCg -3' miRNA: 3'- -GGGUCCcuUGUUGGGUaaGGACuUAG- -5' |
|||||||
| 2276 | 5' | -50.5 | NC_001405.1 | + | 33800 | 1.13 | 0.000975 |
|
Target: 5'- uCCCAGGGAACAACCCAUUCCUGAAUCa -3' miRNA: 3'- -GGGUCCCUUGUUGGGUAAGGACUUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home