miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22770 3' -51.6 NC_005093.1 + 588 1.15 0.000077
Target:  5'- uGGACAAGAUGGCCACAUACUGCCAGCa -3'
miRNA:   3'- -CCUGUUCUACCGGUGUAUGACGGUCG- -5'
22770 3' -51.6 NC_005093.1 + 4330 0.7 0.232314
Target:  5'- uGACAAuGAUGGCCAgAaGCU-CCAGUu -3'
miRNA:   3'- cCUGUU-CUACCGGUgUaUGAcGGUCG- -5'
22770 3' -51.6 NC_005093.1 + 4178 0.67 0.356561
Target:  5'- uGGACAAGAUGGacauucgccccguuCCGCAuccUAgUGuCCAGa -3'
miRNA:   3'- -CCUGUUCUACC--------------GGUGU---AUgAC-GGUCg -5'
22770 3' -51.6 NC_005093.1 + 4445 0.67 0.356561
Target:  5'- uGGCGAGGUGGUaCAUggggaucucuugggGUGCUGCaGGCa -3'
miRNA:   3'- cCUGUUCUACCG-GUG--------------UAUGACGgUCG- -5'
22770 3' -51.6 NC_005093.1 + 7269 0.66 0.433593
Target:  5'- uGGAgAuGAUuGCCGCAgagGCUGCCuucuugagugcaAGCg -3'
miRNA:   3'- -CCUgUuCUAcCGGUGUa--UGACGG------------UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.