miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22771 3' -52.9 NC_005093.1 + 8636 0.66 0.396356
Target:  5'- aAGAA-UCCAuGUCCCCugu-CGGGCCCg -3'
miRNA:   3'- -UCUUgAGGU-CAGGGGcuguGUUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 9933 0.66 0.386048
Target:  5'- aGGAACcaCCaAGUCCCCGuccuCugAGAUUCg -3'
miRNA:   3'- -UCUUGa-GG-UCAGGGGCu---GugUUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 5217 0.67 0.337227
Target:  5'- -----aCCAGUCUUCGACAauuGGGCCCu -3'
miRNA:   3'- ucuugaGGUCAGGGGCUGUg--UUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 887 0.67 0.310164
Target:  5'- uGGAGCUCCaaGGUUcuuagaggCCUGAUugaAUAGACCCa -3'
miRNA:   3'- -UCUUGAGG--UCAG--------GGGCUG---UGUUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 1979 0.68 0.29306
Target:  5'- aGGcGgUCCGGUaCCCGACucCAAAUCCg -3'
miRNA:   3'- -UCuUgAGGUCAgGGGCUGu-GUUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 6057 0.69 0.25354
Target:  5'- cGAGCUCCGGgCCUgGAC-CugucAGCCCu -3'
miRNA:   3'- uCUUGAGGUCaGGGgCUGuGu---UUGGG- -5'
22771 3' -52.9 NC_005093.1 + 3482 0.71 0.165863
Target:  5'- gGGAaguGCUCCaAGUCgCCGuguCAGACCCa -3'
miRNA:   3'- -UCU---UGAGG-UCAGgGGCuguGUUUGGG- -5'
22771 3' -52.9 NC_005093.1 + 1879 1.12 0.000127
Target:  5'- gAGAACUCCAGUCCCCGACACAAACCCc -3'
miRNA:   3'- -UCUUGAGGUCAGGGGCUGUGUUUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.