miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22820 3' -47.8 NC_005135.1 + 53244 0.66 0.999805
Target:  5'- ------aUAGGCGAuAGUCGCGAAAu -3'
miRNA:   3'- acaauugGUCCGCUuUCGGCGUUUUc -5'
22820 3' -47.8 NC_005135.1 + 129215 0.66 0.999682
Target:  5'- cGUcGGCCuucaguuGaGCGAAAGCCGgGAAAa -3'
miRNA:   3'- aCAaUUGGu------C-CGCUUUCGGCgUUUUc -5'
22820 3' -47.8 NC_005135.1 + 104385 0.66 0.999633
Target:  5'- aGUgGACCccgcugcuggaAGGCGAAGGCCugccggaaauugcugGCAAAAa -3'
miRNA:   3'- aCAaUUGG-----------UCCGCUUUCGG---------------CGUUUUc -5'
22820 3' -47.8 NC_005135.1 + 168698 0.66 0.999598
Target:  5'- ---gAACCAGGUGA-AGCgGCAu--- -3'
miRNA:   3'- acaaUUGGUCCGCUuUCGgCGUuuuc -5'
22820 3' -47.8 NC_005135.1 + 127896 0.66 0.999598
Target:  5'- ---gGGCCGGGUGccaaccuGAGUCGCGGAAc -3'
miRNA:   3'- acaaUUGGUCCGCu------UUCGGCGUUUUc -5'
22820 3' -47.8 NC_005135.1 + 2973 0.66 0.999495
Target:  5'- aGUUAACgAgcgagcucgucGGCGAGGGCCGUu---- -3'
miRNA:   3'- aCAAUUGgU-----------CCGCUUUCGGCGuuuuc -5'
22820 3' -47.8 NC_005135.1 + 125733 0.66 0.999484
Target:  5'- ---aAGCCAGGCGAgcgugaaGAGCgGUggauAAAAGg -3'
miRNA:   3'- acaaUUGGUCCGCU-------UUCGgCG----UUUUC- -5'
22820 3' -47.8 NC_005135.1 + 127996 0.67 0.99937
Target:  5'- -uUUAACCagauGGGCGAuAGCCGUc---- -3'
miRNA:   3'- acAAUUGG----UCCGCUuUCGGCGuuuuc -5'
22820 3' -47.8 NC_005135.1 + 114992 0.67 0.99937
Target:  5'- aUGgac-CCGGGUGAGcugGGCCGUAAGGc -3'
miRNA:   3'- -ACaauuGGUCCGCUU---UCGGCGUUUUc -5'
22820 3' -47.8 NC_005135.1 + 99779 0.67 0.999039
Target:  5'- --cUGGCCAcGGCGguAGCCGgCuGGAGa -3'
miRNA:   3'- acaAUUGGU-CCGCuuUCGGC-GuUUUC- -5'
22820 3' -47.8 NC_005135.1 + 93382 0.67 0.998569
Target:  5'- -aUUAGCC-GGCGAA-GCCGUucGAGc -3'
miRNA:   3'- acAAUUGGuCCGCUUuCGGCGuuUUC- -5'
22820 3' -47.8 NC_005135.1 + 99716 0.69 0.993407
Target:  5'- ---aAACCu-GCGAuaucAGCCGCAAGAGg -3'
miRNA:   3'- acaaUUGGucCGCUu---UCGGCGUUUUC- -5'
22820 3' -47.8 NC_005135.1 + 39719 0.7 0.99237
Target:  5'- ---gAAUCAGGUGAAuugaauGGCCGCAAc-- -3'
miRNA:   3'- acaaUUGGUCCGCUU------UCGGCGUUuuc -5'
22820 3' -47.8 NC_005135.1 + 27109 0.7 0.99237
Target:  5'- --aUGGCCAGaGCGAAagcAGCUGCccaGAAAGa -3'
miRNA:   3'- acaAUUGGUC-CGCUU---UCGGCG---UUUUC- -5'
22820 3' -47.8 NC_005135.1 + 169047 0.7 0.98991
Target:  5'- uUGUUAGCgCAGGCGuugugAAGGCaCGCAc--- -3'
miRNA:   3'- -ACAAUUG-GUCCGC-----UUUCG-GCGUuuuc -5'
22820 3' -47.8 NC_005135.1 + 36855 0.7 0.9867
Target:  5'- -aUUAGCCAGGCGAAaagcaguGGCCGa----- -3'
miRNA:   3'- acAAUUGGUCCGCUU-------UCGGCguuuuc -5'
22820 3' -47.8 NC_005135.1 + 47419 0.71 0.985105
Target:  5'- gUGUUcaGACCguaaAGGUGAGAGCCGUg---- -3'
miRNA:   3'- -ACAA--UUGG----UCCGCUUUCGGCGuuuuc -5'
22820 3' -47.8 NC_005135.1 + 133871 0.71 0.981044
Target:  5'- cUGUgaUGACCAuGCGAAAGCUGCcGGAu -3'
miRNA:   3'- -ACA--AUUGGUcCGCUUUCGGCGuUUUc -5'
22820 3' -47.8 NC_005135.1 + 49360 0.72 0.967339
Target:  5'- cGUUGG-CAGGCGGAAGuUCGCGAAc- -3'
miRNA:   3'- aCAAUUgGUCCGCUUUC-GGCGUUUuc -5'
22820 3' -47.8 NC_005135.1 + 157884 0.73 0.960262
Target:  5'- --aUGGCCAGGCGGAuGGCUGCu---- -3'
miRNA:   3'- acaAUUGGUCCGCUU-UCGGCGuuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.