miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22825 5' -44.3 NC_005135.1 + 15603 0.66 0.999999
Target:  5'- aACAauUGGCU---GACGCCUACAAa-- -3'
miRNA:   3'- cUGU--GCCGAuuaUUGUGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 74610 0.66 0.999999
Target:  5'- cGGCACcuucugcaGGCUGA--ACACCaACGAUUUg -3'
miRNA:   3'- -CUGUG--------CCGAUUauUGUGGaUGUUAAA- -5'
22825 5' -44.3 NC_005135.1 + 168814 0.66 0.999998
Target:  5'- -cCACGGUUGGUcucuugguCACCUACGAa-- -3'
miRNA:   3'- cuGUGCCGAUUAuu------GUGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 105410 0.67 0.999997
Target:  5'- -gUugGGCUGGUGAauCCUACAAa-- -3'
miRNA:   3'- cuGugCCGAUUAUUguGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 724 0.67 0.999995
Target:  5'- cAUACGGU----GACACCUACGAc-- -3'
miRNA:   3'- cUGUGCCGauuaUUGUGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 55038 0.67 0.999993
Target:  5'- aAUACGGaUGAUAccuuCACCUACAAUg- -3'
miRNA:   3'- cUGUGCCgAUUAUu---GUGGAUGUUAaa -5'
22825 5' -44.3 NC_005135.1 + 156843 0.68 0.999973
Target:  5'- uGACgACGGCgauuuguAUACCUACGAUa- -3'
miRNA:   3'- -CUG-UGCCGauuau--UGUGGAUGUUAaa -5'
22825 5' -44.3 NC_005135.1 + 153237 0.68 0.999963
Target:  5'- aGCGCGuGC----AACGCCUGCAGUUa -3'
miRNA:   3'- cUGUGC-CGauuaUUGUGGAUGUUAAa -5'
22825 5' -44.3 NC_005135.1 + 107627 0.7 0.999456
Target:  5'- aGCACGGCUAAUGguAUGCCgucACGGUa- -3'
miRNA:   3'- cUGUGCCGAUUAU--UGUGGa--UGUUAaa -5'
22825 5' -44.3 NC_005135.1 + 98366 0.71 0.998708
Target:  5'- cGGCACGGCcAGUGGCugACCgaacgACAGUUg -3'
miRNA:   3'- -CUGUGCCGaUUAUUG--UGGa----UGUUAAa -5'
22825 5' -44.3 NC_005135.1 + 72290 0.72 0.998421
Target:  5'- aGAUaaAUGGCUAGUGgcagccaaGCGCCUGCGAUc- -3'
miRNA:   3'- -CUG--UGCCGAUUAU--------UGUGGAUGUUAaa -5'
22825 5' -44.3 NC_005135.1 + 8217 0.72 0.998082
Target:  5'- cACGCaGUUGAUGACAUCUGCAGc-- -3'
miRNA:   3'- cUGUGcCGAUUAUUGUGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 149372 0.75 0.980838
Target:  5'- uGAUACGGUUGAagauauUGGCGCCUGCGGa-- -3'
miRNA:   3'- -CUGUGCCGAUU------AUUGUGGAUGUUaaa -5'
22825 5' -44.3 NC_005135.1 + 81795 0.77 0.94568
Target:  5'- aACAUGGCgacGAUAACACCUGCuGUUa -3'
miRNA:   3'- cUGUGCCGa--UUAUUGUGGAUGuUAAa -5'
22825 5' -44.3 NC_005135.1 + 102753 0.95 0.229023
Target:  5'- cGACACGGCUAAUAACACCU-CAAUUUc -3'
miRNA:   3'- -CUGUGCCGAUUAUUGUGGAuGUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.