miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22828 5' -50.7 NC_005135.1 + 19820 0.66 0.99479
Target:  5'- uGCCAACgUUCUCAugCAcCUgGCCa- -3'
miRNA:   3'- -CGGUUGaAGGAGUugGUuGAaCGGgu -5'
22828 5' -50.7 NC_005135.1 + 39113 0.66 0.994298
Target:  5'- -aUAGCUUCCggCGGCCAuaucaguuacguugaGC-UGCCCAa -3'
miRNA:   3'- cgGUUGAAGGa-GUUGGU---------------UGaACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 51638 0.66 0.99395
Target:  5'- aCCGGCUUCgUUAAaCGACUUGCUgAg -3'
miRNA:   3'- cGGUUGAAGgAGUUgGUUGAACGGgU- -5'
22828 5' -50.7 NC_005135.1 + 61795 0.66 0.99395
Target:  5'- uGUUcGCUUCCUCGACuCAGUUUGUUCAg -3'
miRNA:   3'- -CGGuUGAAGGAGUUG-GUUGAACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 160955 0.66 0.99395
Target:  5'- aGCgAAUcauacuggUUCCUCAACCAACUccguggcauggGUCCAu -3'
miRNA:   3'- -CGgUUG--------AAGGAGUUGGUUGAa----------CGGGU- -5'
22828 5' -50.7 NC_005135.1 + 138262 0.66 0.993005
Target:  5'- cGCCGACUUCaa-GACCGcAUaUGCCUg -3'
miRNA:   3'- -CGGUUGAAGgagUUGGU-UGaACGGGu -5'
22828 5' -50.7 NC_005135.1 + 146659 0.67 0.990762
Target:  5'- cGUCAACccgUUCaCUUuugGAgCAACUUGCCCGa -3'
miRNA:   3'- -CGGUUG---AAG-GAG---UUgGUUGAACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 59842 0.68 0.980557
Target:  5'- cCCgAAUUUCCUUAAUCAGCg-GCCCu -3'
miRNA:   3'- cGG-UUGAAGGAGUUGGUUGaaCGGGu -5'
22828 5' -50.7 NC_005135.1 + 51422 0.69 0.970133
Target:  5'- -gCAACUUCUUCAGCCAGCUcaGCa-- -3'
miRNA:   3'- cgGUUGAAGGAGUUGGUUGAa-CGggu -5'
22828 5' -50.7 NC_005135.1 + 112750 0.69 0.970133
Target:  5'- cGCCAACaUCCUgAACCAcggGCUuUGUUCGa -3'
miRNA:   3'- -CGGUUGaAGGAgUUGGU---UGA-ACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 86852 0.69 0.963639
Target:  5'- -aCAACUUCCggugCAcugACCAugACUcUGCCCAa -3'
miRNA:   3'- cgGUUGAAGGa---GU---UGGU--UGA-ACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 65176 0.69 0.963639
Target:  5'- cGCCAACUUUCUUuuucgGACCAguGCUauCCCAc -3'
miRNA:   3'- -CGGUUGAAGGAG-----UUGGU--UGAacGGGU- -5'
22828 5' -50.7 NC_005135.1 + 164153 0.69 0.960047
Target:  5'- cCCGAUUUCUUcCAACCGAUgaccaGCCCGg -3'
miRNA:   3'- cGGUUGAAGGA-GUUGGUUGaa---CGGGU- -5'
22828 5' -50.7 NC_005135.1 + 152707 0.7 0.94326
Target:  5'- cGCCGGCUcggCCauUUAACCA--UUGCCCAu -3'
miRNA:   3'- -CGGUUGAa--GG--AGUUGGUugAACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 27235 0.73 0.836162
Target:  5'- uCCAGCaaaUCUUCAACCAACUUGCg-- -3'
miRNA:   3'- cGGUUGa--AGGAGUUGGUUGAACGggu -5'
22828 5' -50.7 NC_005135.1 + 35026 0.73 0.836162
Target:  5'- aGCCAGCUcgacuacaUCaUCAGCgCAGCUaaUGCCCAg -3'
miRNA:   3'- -CGGUUGA--------AGgAGUUG-GUUGA--ACGGGU- -5'
22828 5' -50.7 NC_005135.1 + 8297 1.12 0.006517
Target:  5'- cGCCAACUUCCUCAACCAACUUGCCCAu -3'
miRNA:   3'- -CGGUUGAAGGAGUUGGUUGAACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.