miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22830 3' -47 NC_005135.1 + 42437 0.68 0.999486
Target:  5'- uCAAAUAAAAugauaaaGCCCUCUucGGAGGGc -3'
miRNA:   3'- -GUUUGUUUUuc-----UGGGAGGcuUCUCCC- -5'
22830 3' -47 NC_005135.1 + 4417 0.68 0.999211
Target:  5'- -uGACGAAAAGGCCuCUUCGGAGGc-- -3'
miRNA:   3'- guUUGUUUUUCUGG-GAGGCUUCUccc -5'
22830 3' -47 NC_005135.1 + 34877 0.69 0.998265
Target:  5'- ---cCAAAuguGGgCCUCCGGAGAGGc -3'
miRNA:   3'- guuuGUUUuu-CUgGGAGGCUUCUCCc -5'
22830 3' -47 NC_005135.1 + 172430 0.71 0.99438
Target:  5'- ------cAAAGGCCCUCUucGGAGGGc -3'
miRNA:   3'- guuuguuUUUCUGGGAGGcuUCUCCC- -5'
22830 3' -47 NC_005135.1 + 64062 0.74 0.968021
Target:  5'- --uACAAAAAuAgCCUCCGAAGAGGc -3'
miRNA:   3'- guuUGUUUUUcUgGGAGGCUUCUCCc -5'
22830 3' -47 NC_005135.1 + 16471 0.75 0.953259
Target:  5'- gCAAAUGGAAacgcgcauAGACCCUCUucGGAGGGu -3'
miRNA:   3'- -GUUUGUUUU--------UCUGGGAGGcuUCUCCC- -5'
22830 3' -47 NC_005135.1 + 74083 0.77 0.89156
Target:  5'- --uACAAAAAaauGCCCUCCGuAGAGGGc -3'
miRNA:   3'- guuUGUUUUUc--UGGGAGGCuUCUCCC- -5'
22830 3' -47 NC_005135.1 + 4209 0.77 0.876994
Target:  5'- aAAACAAcAAAGG-CCUCCGAAGAGGc -3'
miRNA:   3'- gUUUGUU-UUUCUgGGAGGCUUCUCCc -5'
22830 3' -47 NC_005135.1 + 166599 0.77 0.876994
Target:  5'- aAAACAAcAAAGG-CCUCCGAAGAGGc -3'
miRNA:   3'- gUUUGUU-UUUCUgGGAGGCUUCUCCc -5'
22830 3' -47 NC_005135.1 + 42227 0.82 0.657169
Target:  5'- -----cGAAAG-CCCUCCGAAGAGGGc -3'
miRNA:   3'- guuuguUUUUCuGGGAGGCUUCUCCC- -5'
22830 3' -47 NC_005135.1 + 134149 0.87 0.449515
Target:  5'- aAAACAAAAAuGCCCUCCGuAGAGGGc -3'
miRNA:   3'- gUUUGUUUUUcUGGGAGGCuUCUCCC- -5'
22830 3' -47 NC_005135.1 + 73473 0.91 0.283146
Target:  5'- cCAAuuACAAAAAuGCCCUCCGAAGAGGGc -3'
miRNA:   3'- -GUU--UGUUUUUcUGGGAGGCUUCUCCC- -5'
22830 3' -47 NC_005135.1 + 115841 0.93 0.225816
Target:  5'- aCAuACAAAAAuGCCCUCCGAAGAGGGc -3'
miRNA:   3'- -GUuUGUUUUUcUGGGAGGCUUCUCCC- -5'
22830 3' -47 NC_005135.1 + 172228 1.02 0.072324
Target:  5'- --uACAAAAAGGCCCUCCGAAGAGGGc -3'
miRNA:   3'- guuUGUUUUUCUGGGAGGCUUCUCCC- -5'
22830 3' -47 NC_005135.1 + 16251 1.11 0.019971
Target:  5'- uCAAACAAAAAGACCCUCCGAAGAGGGu -3'
miRNA:   3'- -GUUUGUUUUUCUGGGAGGCUUCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.