miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22836 5' -53.8 NC_005135.1 + 129831 0.66 0.96881
Target:  5'- uAUCGUGCUuuacuuCACgUGCAuuuuCGGUGCg -3'
miRNA:   3'- cUAGUACGGuau---GUGgACGU----GCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 73731 0.66 0.962271
Target:  5'- -uUCAUGaacCCAaACugCUGgACGGCGg -3'
miRNA:   3'- cuAGUAC---GGUaUGugGACgUGCCGCg -5'
22836 5' -53.8 NC_005135.1 + 28677 0.66 0.96192
Target:  5'- gGGUUAUGCCAUuagcuuucgaauaAUcgaugGCCUGCACGaaCGCa -3'
miRNA:   3'- -CUAGUACGGUA-------------UG-----UGGACGUGCc-GCG- -5'
22836 5' -53.8 NC_005135.1 + 164193 0.67 0.950768
Target:  5'- aAUCgGUGCCuuugaAUugACCggUGCACuGGCGCu -3'
miRNA:   3'- cUAG-UACGG-----UAugUGG--ACGUG-CCGCG- -5'
22836 5' -53.8 NC_005135.1 + 34173 0.67 0.943766
Target:  5'- -uUCAuUGCCguacguaauuuuaccGUccACACCUGCGCGGC-Ca -3'
miRNA:   3'- cuAGU-ACGG---------------UA--UGUGGACGUGCCGcG- -5'
22836 5' -53.8 NC_005135.1 + 43230 0.67 0.937132
Target:  5'- -----cGCgAaGCAUCUGUAUGGCGCu -3'
miRNA:   3'- cuaguaCGgUaUGUGGACGUGCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 68153 0.67 0.937132
Target:  5'- -uUCAgUGCCAUGCugCaGCaACGGCu- -3'
miRNA:   3'- cuAGU-ACGGUAUGugGaCG-UGCCGcg -5'
22836 5' -53.8 NC_005135.1 + 91393 0.67 0.937132
Target:  5'- gGAUUAagaaCGgagaGCGCCUGUGCGGCGCc -3'
miRNA:   3'- -CUAGUacg-GUa---UGUGGACGUGCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 76662 0.68 0.926821
Target:  5'- cGAUUuguUGUUAUuugcgGCACCUGaaucgGCGGCGCg -3'
miRNA:   3'- -CUAGu--ACGGUA-----UGUGGACg----UGCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 165089 0.68 0.926279
Target:  5'- cGAUCGUauggaggGCCAUGcCAUCUGCAgGGUccaccGCg -3'
miRNA:   3'- -CUAGUA-------CGGUAU-GUGGACGUgCCG-----CG- -5'
22836 5' -53.8 NC_005135.1 + 1613 0.68 0.903253
Target:  5'- cGGUCGUucugGCCAaGCAUUUGCuauuauugGCGGCGUa -3'
miRNA:   3'- -CUAGUA----CGGUaUGUGGACG--------UGCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 27599 0.69 0.860788
Target:  5'- -----cGCCAU-CACUUGUgACGGCGCu -3'
miRNA:   3'- cuaguaCGGUAuGUGGACG-UGCCGCG- -5'
22836 5' -53.8 NC_005135.1 + 72321 1.13 0.002665
Target:  5'- cGAUCAUGCCAUACACCUGCACGGCGCa -3'
miRNA:   3'- -CUAGUACGGUAUGUGGACGUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.