miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22838 5' -42 NC_005135.1 + 100867 0.66 1
Target:  5'- aAACUUCAuacaaacucCAAaUGUAAGGCAGc -3'
miRNA:   3'- cUUGAAGUuuaa-----GUUcACAUUCCGUC- -5'
22838 5' -42 NC_005135.1 + 38877 0.66 1
Target:  5'- aGAGCUUCAAuguUUCuacgcaUGUuGGGCAGc -3'
miRNA:   3'- -CUUGAAGUUu--AAGuuc---ACAuUCCGUC- -5'
22838 5' -42 NC_005135.1 + 25993 0.66 1
Target:  5'- uAACUUCGAAUUUccGGUGUGGuuuguGGCAa -3'
miRNA:   3'- cUUGAAGUUUAAGu-UCACAUU-----CCGUc -5'
22838 5' -42 NC_005135.1 + 141236 0.8 0.957978
Target:  5'- ----gUCGAAUUCGAGgGUAGGGCAGa -3'
miRNA:   3'- cuugaAGUUUAAGUUCaCAUUCCGUC- -5'
22838 5' -42 NC_005135.1 + 100243 1.13 0.047598
Target:  5'- aGAACUUCAAAUUCAAGUGUAAGGCAGg -3'
miRNA:   3'- -CUUGAAGUUUAAGUUCACAUUCCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.