Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22840 | 3' | -53 | NC_005135.1 | + | 6883 | 0.66 | 0.972095 |
Target: 5'- aUAUGGCCCAUU---UUGCUGGCUu-- -3' miRNA: 3'- -AUGCUGGGUAGuuaAACGGCCGGucu -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 59141 | 0.73 | 0.723058 |
Target: 5'- aAUGACUUu---AUUUGCCGGCCGGAu -3' miRNA: 3'- aUGCUGGGuaguUAAACGGCCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 79854 | 0.66 | 0.96598 |
Target: 5'- -uUGACCCAuUCA---UGCUGGgCAGAg -3' miRNA: 3'- auGCUGGGU-AGUuaaACGGCCgGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 86068 | 0.67 | 0.951045 |
Target: 5'- cUGCGACCCAUgAAUcUGuuGaGCCGc- -3' miRNA: 3'- -AUGCUGGGUAgUUAaACggC-CGGUcu -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 88305 | 0.66 | 0.975875 |
Target: 5'- aUGCGaauacuucGCCCAUCuaaaggaauaaUGCCGGUCGGGc -3' miRNA: 3'- -AUGC--------UGGGUAGuuaa-------ACGGCCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 90189 | 0.72 | 0.762799 |
Target: 5'- gGCGACCguaGUCAcaaucGCCGGCCAGu -3' miRNA: 3'- aUGCUGGg--UAGUuaaa-CGGCCGGUCu -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 95643 | 0.68 | 0.921373 |
Target: 5'- --aGGCCCuUCAAUUUGCUcGUCAGGu -3' miRNA: 3'- augCUGGGuAGUUAAACGGcCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 115203 | 1.08 | 0.006411 |
Target: 5'- aUACGACCCAUCAAUUUGCCGGCCAGAa -3' miRNA: 3'- -AUGCUGGGUAGUUAAACGGCCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 132255 | 0.68 | 0.921373 |
Target: 5'- uUGCuGGCCuCAUUAAca-GUCGGCCAGAg -3' miRNA: 3'- -AUG-CUGG-GUAGUUaaaCGGCCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 133532 | 0.68 | 0.921373 |
Target: 5'- -uCGGCaCCGUCAAUcgaCUGGCCGGAu -3' miRNA: 3'- auGCUG-GGUAGUUAaacGGCCGGUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 133636 | 0.67 | 0.946718 |
Target: 5'- cAUGGCCUua-AGUUUGCCGGUuuCAGGg -3' miRNA: 3'- aUGCUGGGuagUUAAACGGCCG--GUCU- -5' |
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22840 | 3' | -53 | NC_005135.1 | + | 147154 | 0.68 | 0.921373 |
Target: 5'- cUGCGaACUCAUCcagagUUGCCGGUguGAc -3' miRNA: 3'- -AUGC-UGGGUAGuua--AACGGCCGguCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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