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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22840 | 5' | -50.5 | NC_005135.1 | + | 39575 | 0.67 | 0.989231 |
Target: 5'- -aUUGGACUAACAGGcaccugacuaccaGUGAUGGAUc- -3' miRNA: 3'- caAGCCUGGUUGUUC-------------CGCUACCUAua -5' |
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22840 | 5' | -50.5 | NC_005135.1 | + | 86098 | 0.67 | 0.988945 |
Target: 5'- --gCGGAaCAGCAauggcuaucgacauGGGUGAUGGAUAc -3' miRNA: 3'- caaGCCUgGUUGU--------------UCCGCUACCUAUa -5' |
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22840 | 5' | -50.5 | NC_005135.1 | + | 69408 | 0.67 | 0.986271 |
Target: 5'- uGUUUGGugCAAac-GGCGAgUGGGUAg -3' miRNA: 3'- -CAAGCCugGUUguuCCGCU-ACCUAUa -5' |
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22840 | 5' | -50.5 | NC_005135.1 | + | 25363 | 0.71 | 0.932589 |
Target: 5'- --cUGGGCCAACuGGGUGAUGGu--- -3' miRNA: 3'- caaGCCUGGUUGuUCCGCUACCuaua -5' |
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22840 | 5' | -50.5 | NC_005135.1 | + | 115237 | 1.05 | 0.016761 |
Target: 5'- uGUUCGGACCAACAAGGCGAUGGAUAUc -3' miRNA: 3'- -CAAGCCUGGUUGUUCCGCUACCUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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