Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22841 | 3' | -50 | NC_005135.1 | + | 166742 | 0.66 | 0.997253 |
Target: 5'- cGACAGCAGCgAuGGCGCUGcUUCGccAGCa -3' miRNA: 3'- -UUGUUGUUGgU-CUGUGACcAGGU--UCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 132471 | 0.66 | 0.997253 |
Target: 5'- uGCAGCAACCAGGCGCga-UUCGAu- -3' miRNA: 3'- uUGUUGUUGGUCUGUGaccAGGUUcg -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 54983 | 0.66 | 0.997158 |
Target: 5'- uACGACaAACCAGAacuucuucaccaGCUGGagUAAGCg -3' miRNA: 3'- uUGUUG-UUGGUCUg-----------UGACCagGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 70217 | 0.67 | 0.99389 |
Target: 5'- uGCAAUaAGCCAGACuCUG--CCAAGCu -3' miRNA: 3'- uUGUUG-UUGGUCUGuGACcaGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 76140 | 0.67 | 0.990639 |
Target: 5'- uACGAaaaaGGCCuAGACAUU-GUCCAGGCc -3' miRNA: 3'- uUGUUg---UUGG-UCUGUGAcCAGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 104699 | 0.68 | 0.98435 |
Target: 5'- -cCGAUGACCGGuccUACUGG-CCAGGUa -3' miRNA: 3'- uuGUUGUUGGUCu--GUGACCaGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 90379 | 0.74 | 0.844357 |
Target: 5'- uGCGACAACCAuGACGCcacuuaaaacuaaguUGGcuaUCCAGGCu -3' miRNA: 3'- uUGUUGUUGGU-CUGUG---------------ACC---AGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 120934 | 1.1 | 0.008849 |
Target: 5'- gAACAACAACCAGACACUGGUCCAAGCu -3' miRNA: 3'- -UUGUUGUUGGUCUGUGACCAGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 123429 | 0.7 | 0.966299 |
Target: 5'- cAGCAAUAuucCCGGGCuAUUGGUCaGAGCa -3' miRNA: 3'- -UUGUUGUu--GGUCUG-UGACCAGgUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 40026 | 0.69 | 0.972503 |
Target: 5'- uGACGAUAACauuuGGCaugggaacuaACUGGUUCGAGCg -3' miRNA: 3'- -UUGUUGUUGgu--CUG----------UGACCAGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 5909 | 0.69 | 0.977837 |
Target: 5'- cGGCAugGACuCAGACgaugGCUGGUUCAAa- -3' miRNA: 3'- -UUGUugUUG-GUCUG----UGACCAGGUUcg -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 55425 | 0.69 | 0.979741 |
Target: 5'- uACGAUGGCCAGAUGCUGauggacaugcguUCCAAGUa -3' miRNA: 3'- uUGUUGUUGGUCUGUGACc-----------AGGUUCG- -5' |
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22841 | 3' | -50 | NC_005135.1 | + | 863 | 0.66 | 0.996165 |
Target: 5'- aAGC-GCAA--AGACGCUGGUCCGAa- -3' miRNA: 3'- -UUGuUGUUggUCUGUGACCAGGUUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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