miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22844 5' -47.2 NC_005135.1 + 59694 0.66 0.99991
Target:  5'- --aGAUGGA-CC-AACGAGGUAUUCCg -3'
miRNA:   3'- uaaCUACUUcGGcUUGUUUCGUAGGG- -5'
22844 5' -47.2 NC_005135.1 + 162098 0.66 0.99991
Target:  5'- gAUUGAauugguaacauUGuuGCCGAuCGAAGaugaAUCCCg -3'
miRNA:   3'- -UAACU-----------ACuuCGGCUuGUUUCg---UAGGG- -5'
22844 5' -47.2 NC_005135.1 + 101751 0.66 0.999905
Target:  5'- cGUUGGUuuaauaaGAAGCUcuACGAAGCAcugcguaUCCCa -3'
miRNA:   3'- -UAACUA-------CUUCGGcuUGUUUCGU-------AGGG- -5'
22844 5' -47.2 NC_005135.1 + 107767 0.66 0.999846
Target:  5'- --cGaAUGucGCCGAGCAGcacGGCAUCa- -3'
miRNA:   3'- uaaC-UACuuCGGCUUGUU---UCGUAGgg -5'
22844 5' -47.2 NC_005135.1 + 36310 0.66 0.999846
Target:  5'- --gGGUGaAAGCaCGGGC-AAGUAUCCa -3'
miRNA:   3'- uaaCUAC-UUCG-GCUUGuUUCGUAGGg -5'
22844 5' -47.2 NC_005135.1 + 92698 0.66 0.999801
Target:  5'- uGUUGAcgcuacUGAAGCCGAAguu-GaUAUCCCa -3'
miRNA:   3'- -UAACU------ACUUCGGCUUguuuC-GUAGGG- -5'
22844 5' -47.2 NC_005135.1 + 159908 0.66 0.999801
Target:  5'- --cGAUGAuuucGCCGAGuucgauCAAAuGCAUCUCa -3'
miRNA:   3'- uaaCUACUu---CGGCUU------GUUU-CGUAGGG- -5'
22844 5' -47.2 NC_005135.1 + 84761 0.67 0.999675
Target:  5'- uUUGAUGAGGuuGAGCAGcuuauuguAGUaaGUgCCa -3'
miRNA:   3'- uAACUACUUCggCUUGUU--------UCG--UAgGG- -5'
22844 5' -47.2 NC_005135.1 + 81940 0.67 0.999589
Target:  5'- cAUUGAUGAAGUCGA----AGUAUUCa -3'
miRNA:   3'- -UAACUACUUCGGCUuguuUCGUAGGg -5'
22844 5' -47.2 NC_005135.1 + 101060 0.67 0.999356
Target:  5'- --cGAUGAAGUuuguCGAcugcuCGAcGCGUCCCg -3'
miRNA:   3'- uaaCUACUUCG----GCUu----GUUuCGUAGGG- -5'
22844 5' -47.2 NC_005135.1 + 132065 0.68 0.999016
Target:  5'- gGUUGAUGAAGCCGuaAACGAauuuuaAGCAa--- -3'
miRNA:   3'- -UAACUACUUCGGC--UUGUU------UCGUaggg -5'
22844 5' -47.2 NC_005135.1 + 171856 0.68 0.998533
Target:  5'- -----aGAcGCCGAACuAGGCAUCgCCu -3'
miRNA:   3'- uaacuaCUuCGGCUUGuUUCGUAG-GG- -5'
22844 5' -47.2 NC_005135.1 + 96499 0.69 0.997441
Target:  5'- --aGAUGuuGGCCGAGCGcAAGCGUUg- -3'
miRNA:   3'- uaaCUACu-UCGGCUUGU-UUCGUAGgg -5'
22844 5' -47.2 NC_005135.1 + 23466 0.7 0.993223
Target:  5'- uAUUGAUGAaccaGGCCGGAUAuucGGUAUUCg -3'
miRNA:   3'- -UAACUACU----UCGGCUUGUu--UCGUAGGg -5'
22844 5' -47.2 NC_005135.1 + 29323 0.7 0.992157
Target:  5'- --cGAgaaacAAGCCGAaaaacaggcuGCAAAGCAUCUCa -3'
miRNA:   3'- uaaCUac---UUCGGCU----------UGUUUCGUAGGG- -5'
22844 5' -47.2 NC_005135.1 + 32297 0.71 0.989628
Target:  5'- -cUGAUGGAGCUGA-CGAuGCGUUCg -3'
miRNA:   3'- uaACUACUUCGGCUuGUUuCGUAGGg -5'
22844 5' -47.2 NC_005135.1 + 21767 0.71 0.989628
Target:  5'- --cGAUGAAGgcaagcCCGaAGCAGAGUuUCCCa -3'
miRNA:   3'- uaaCUACUUC------GGC-UUGUUUCGuAGGG- -5'
22844 5' -47.2 NC_005135.1 + 28020 0.71 0.988145
Target:  5'- --cGAU-AAGUCGGACuGAGCAUCCa -3'
miRNA:   3'- uaaCUAcUUCGGCUUGuUUCGUAGGg -5'
22844 5' -47.2 NC_005135.1 + 44381 0.73 0.961484
Target:  5'- -aUGGUGGAGCCGAuuacugcggcagcGCAAccaagaacaaaauaGGCAUCaCCu -3'
miRNA:   3'- uaACUACUUCGGCU-------------UGUU--------------UCGUAG-GG- -5'
22844 5' -47.2 NC_005135.1 + 144745 1.12 0.013468
Target:  5'- uAUUGAUGAAGCCGAACAAAGCAUCCCa -3'
miRNA:   3'- -UAACUACUUCGGCUUGUUUCGUAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.