miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22850 3' -61.3 NC_005135.1 + 131562 0.66 0.686311
Target:  5'- aAACUGGCC-GCACCGGUuacaagCGCagcaaGAACg -3'
miRNA:   3'- -UUGACCGGcCGUGGUCG------GCGg----CUUGg -5'
22850 3' -61.3 NC_005135.1 + 852 0.66 0.686311
Target:  5'- cGCUGGuCCGaaACCGGUaaaGCCGAAUg -3'
miRNA:   3'- uUGACC-GGCcgUGGUCGg--CGGCUUGg -5'
22850 3' -61.3 NC_005135.1 + 34042 0.66 0.666713
Target:  5'- uGCUGGaguaaCgGGCAUCGGUCGCCaGGCUa -3'
miRNA:   3'- uUGACC-----GgCCGUGGUCGGCGGcUUGG- -5'
22850 3' -61.3 NC_005135.1 + 119492 0.67 0.637138
Target:  5'- cAGCUaGCCuGCAUgauaCAGCCGCCGcAACUg -3'
miRNA:   3'- -UUGAcCGGcCGUG----GUCGGCGGC-UUGG- -5'
22850 3' -61.3 NC_005135.1 + 103548 0.67 0.627263
Target:  5'- aAACUGGgC-GCGgUAGCCGuuGAGCUg -3'
miRNA:   3'- -UUGACCgGcCGUgGUCGGCggCUUGG- -5'
22850 3' -61.3 NC_005135.1 + 93808 0.67 0.617391
Target:  5'- gAugUGGCCGGUACUuca-GCCGGAUa -3'
miRNA:   3'- -UugACCGGCCGUGGucggCGGCUUGg -5'
22850 3' -61.3 NC_005135.1 + 167136 0.68 0.578074
Target:  5'- uACUGGCUaGGCacaacGCCGGaaGCCGAAUa -3'
miRNA:   3'- uUGACCGG-CCG-----UGGUCggCGGCUUGg -5'
22850 3' -61.3 NC_005135.1 + 123336 0.68 0.568319
Target:  5'- aAGCUGG-CGGCACaGGCgGCCGuACa -3'
miRNA:   3'- -UUGACCgGCCGUGgUCGgCGGCuUGg -5'
22850 3' -61.3 NC_005135.1 + 106578 0.68 0.546051
Target:  5'- cGACUGGCCcaauccGC-CCAuuaaaacuacuaacGCCGCuCGAGCCa -3'
miRNA:   3'- -UUGACCGGc-----CGuGGU--------------CGGCG-GCUUGG- -5'
22850 3' -61.3 NC_005135.1 + 171872 0.69 0.539327
Target:  5'- gGACUGGaCGGUcuCUAGaCGCCGAACUa -3'
miRNA:   3'- -UUGACCgGCCGu-GGUCgGCGGCUUGG- -5'
22850 3' -61.3 NC_005135.1 + 168178 0.71 0.396152
Target:  5'- ---cGGCUGGUGCCGGCCaGuuGAuuGCCa -3'
miRNA:   3'- uugaCCGGCCGUGGUCGG-CggCU--UGG- -5'
22850 3' -61.3 NC_005135.1 + 158094 0.72 0.356655
Target:  5'- gAACUGcGCCGGCaugaagcaGCCAuCCGCCuGGCCa -3'
miRNA:   3'- -UUGAC-CGGCCG--------UGGUcGGCGGcUUGG- -5'
22850 3' -61.3 NC_005135.1 + 89986 0.81 0.095852
Target:  5'- uAACUGGCCGGCGauugugacuaCGGUCGCCGAugCu -3'
miRNA:   3'- -UUGACCGGCCGUg---------GUCGGCGGCUugG- -5'
22850 3' -61.3 NC_005135.1 + 167986 1.08 0.001108
Target:  5'- cAACUGGCCGGCACCAGCCGCCGAACCu -3'
miRNA:   3'- -UUGACCGGCCGUGGUCGGCGGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.