Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22850 | 5' | -49.4 | NC_005135.1 | + | 107559 | 0.66 | 0.998557 |
Target: 5'- uUGGUuaccAGCCGGgUUgAGGUauuuuACACCGUa -3' miRNA: 3'- cACUA----UUGGCCgAAgUCUA-----UGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 122880 | 0.66 | 0.998557 |
Target: 5'- gGUGAUGAgaCGGCgaCAGGUauGCACC-Ca -3' miRNA: 3'- -CACUAUUg-GCCGaaGUCUA--UGUGGcG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 96849 | 0.66 | 0.998557 |
Target: 5'- ----gAGCUGGCgcgaaAGGUugGCCGCc -3' miRNA: 3'- cacuaUUGGCCGaag--UCUAugUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 58912 | 0.67 | 0.997052 |
Target: 5'- aGUGAUuACUGGCUgaUC-GAUgGCGcCCGCg -3' miRNA: 3'- -CACUAuUGGCCGA--AGuCUA-UGU-GGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 56057 | 0.68 | 0.992547 |
Target: 5'- aUGAUGauugcACCGGCUaCGGcaGCGCCGa -3' miRNA: 3'- cACUAU-----UGGCCGAaGUCuaUGUGGCg -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 106769 | 0.68 | 0.995218 |
Target: 5'- uUGAgugGACCGGUUuaauaucgaUguGAcagGCACCGCu -3' miRNA: 3'- cACUa--UUGGCCGA---------AguCUa--UGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 160105 | 0.68 | 0.993354 |
Target: 5'- uUGAUcgAACuCGGCgaaaucaucgaaUCGGAUACGCCGg -3' miRNA: 3'- cACUA--UUG-GCCGa-----------AGUCUAUGUGGCg -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 86866 | 0.68 | 0.995218 |
Target: 5'- -cGAUAACUGuaUUUAGuuuaACGCCGCc -3' miRNA: 3'- caCUAUUGGCcgAAGUCua--UGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 142245 | 0.69 | 0.990187 |
Target: 5'- cUGAacUGACCaGCUUCGaaucuGAUACACCaGCc -3' miRNA: 3'- cACU--AUUGGcCGAAGU-----CUAUGUGG-CG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 57476 | 0.7 | 0.971704 |
Target: 5'- -gGAUGGCCGGUUaccCGGAaUGCAUCGUc -3' miRNA: 3'- caCUAUUGGCCGAa--GUCU-AUGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 104700 | 0.7 | 0.971704 |
Target: 5'- -cGAUGACCGGUccuacuggcCAGGUauucGCACUGCg -3' miRNA: 3'- caCUAUUGGCCGaa-------GUCUA----UGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 2237 | 0.71 | 0.958241 |
Target: 5'- -aGcgAACUGGUUUCaAGAU-CACCGCc -3' miRNA: 3'- caCuaUUGGCCGAAG-UCUAuGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 43373 | 0.72 | 0.940938 |
Target: 5'- ---uUGACCGGCacaacgguaccUUCAGGUACugCGUc -3' miRNA: 3'- cacuAUUGGCCG-----------AAGUCUAUGugGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 130744 | 0.73 | 0.907336 |
Target: 5'- -cGAUAucuACU-GCUUCAgGAUACGCCGCa -3' miRNA: 3'- caCUAU---UGGcCGAAGU-CUAUGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 78617 | 0.73 | 0.913579 |
Target: 5'- aGUGAuUGACCGGgUugcuaUCAGggGCAUCGCu -3' miRNA: 3'- -CACU-AUUGGCCgA-----AGUCuaUGUGGCG- -5' |
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22850 | 5' | -49.4 | NC_005135.1 | + | 168021 | 1.12 | 0.009763 |
Target: 5'- gGUGAUAACCGGCUUCAGAUACACCGCc -3' miRNA: 3'- -CACUAUUGGCCGAAGUCUAUGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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