miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 5' -63.5 NC_005137.2 + 100251 0.66 0.596947
Target:  5'- --cCGGGCGCcgcaacgcacGGGCGCGcgucgCGGCauucaCGCCc -3'
miRNA:   3'- gcaGCCCGCG----------CCCGUGCa----GCCG-----GUGG- -5'
22855 5' -63.5 NC_005137.2 + 71096 0.67 0.521028
Target:  5'- uGUCGGGCG-Ga--GCGUUGGCgGCCc -3'
miRNA:   3'- gCAGCCCGCgCccgUGCAGCCGgUGG- -5'
22855 5' -63.5 NC_005137.2 + 38475 0.67 0.530342
Target:  5'- aCGUUuaaaaGCGUaaacuauuucGGGCACGUUGGcCCGCCg -3'
miRNA:   3'- -GCAGcc---CGCG----------CCCGUGCAGCC-GGUGG- -5'
22855 5' -63.5 NC_005137.2 + 45111 0.66 0.549145
Target:  5'- uCG-CGGGCGCGcGaCGCGUCGcacaacuuaaCCACCa -3'
miRNA:   3'- -GCaGCCCGCGCcC-GUGCAGCc---------GGUGG- -5'
22855 5' -63.5 NC_005137.2 + 24396 0.66 0.558625
Target:  5'- uGUUGGaCGCGG---CGUCaGGCCGCCg -3'
miRNA:   3'- gCAGCCcGCGCCcguGCAG-CCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 98147 0.66 0.558625
Target:  5'- -uUCGGcCGCGccuuuuauagccGGCGCG-CGGCCACa -3'
miRNA:   3'- gcAGCCcGCGC------------CCGUGCaGCCGGUGg -5'
22855 5' -63.5 NC_005137.2 + 56498 0.66 0.596947
Target:  5'- gCGUCGugucGCGUGuacGGCguuACGUUGGCCGCa -3'
miRNA:   3'- -GCAGCc---CGCGC---CCG---UGCAGCCGGUGg -5'
22855 5' -63.5 NC_005137.2 + 61365 0.66 0.596947
Target:  5'- gCGUCaaauGGGCgGCcGGCgaguugaugGCGUUGGCgGCCg -3'
miRNA:   3'- -GCAG----CCCG-CGcCCG---------UGCAGCCGgUGG- -5'
22855 5' -63.5 NC_005137.2 + 100044 0.66 0.596947
Target:  5'- cCGaCGcGGCGCGcGGCGCGUucagcaugcuuUGuGCCGCg -3'
miRNA:   3'- -GCaGC-CCGCGC-CCGUGCA-----------GC-CGGUGg -5'
22855 5' -63.5 NC_005137.2 + 75964 0.67 0.502598
Target:  5'- uGUCGuGaCGCGGcGCGCGUUGGUgCACg -3'
miRNA:   3'- gCAGCcC-GCGCC-CGUGCAGCCG-GUGg -5'
22855 5' -63.5 NC_005137.2 + 12879 0.67 0.493489
Target:  5'- --aCGGGCGCGGG-GCGaaacaGGUgGCCg -3'
miRNA:   3'- gcaGCCCGCGCCCgUGCag---CCGgUGG- -5'
22855 5' -63.5 NC_005137.2 + 34978 0.67 0.492583
Target:  5'- uGUCGcguucccguuuguGGCGaCGGGCAa--CGGCCugCa -3'
miRNA:   3'- gCAGC-------------CCGC-GCCCGUgcaGCCGGugG- -5'
22855 5' -63.5 NC_005137.2 + 84568 0.76 0.147751
Target:  5'- aCGUCGGcGCGUucGGGCGgGUCGGgCACg -3'
miRNA:   3'- -GCAGCC-CGCG--CCCGUgCAGCCgGUGg -5'
22855 5' -63.5 NC_005137.2 + 108146 0.73 0.231757
Target:  5'- uCGUCGGGCgGCGGcgGCGUCGGuaugcgcgcgcCCGCCc -3'
miRNA:   3'- -GCAGCCCG-CGCCcgUGCAGCC-----------GGUGG- -5'
22855 5' -63.5 NC_005137.2 + 109409 0.72 0.271671
Target:  5'- cCGUCGGGCucgucaaaaccGCGGccuauGCGCGgcccaUCGGUCACCc -3'
miRNA:   3'- -GCAGCCCG-----------CGCC-----CGUGC-----AGCCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 73770 0.7 0.352592
Target:  5'- uCGUUuGGCGCGGGCGuagccuCGUucgccaCGGCCugCu -3'
miRNA:   3'- -GCAGcCCGCGCCCGU------GCA------GCCGGugG- -5'
22855 5' -63.5 NC_005137.2 + 98030 0.69 0.426155
Target:  5'- aCGUCGGGCgcugcgaGCGGGUccagcagcgccuuucGCGcaaaGGCCGCa -3'
miRNA:   3'- -GCAGCCCG-------CGCCCG---------------UGCag--CCGGUGg -5'
22855 5' -63.5 NC_005137.2 + 36037 0.68 0.448297
Target:  5'- --aCGGGCGCGGGCguuaaaaGCGUUGuuGCaUACCc -3'
miRNA:   3'- gcaGCCCGCGCCCG-------UGCAGC--CG-GUGG- -5'
22855 5' -63.5 NC_005137.2 + 97987 0.68 0.457854
Target:  5'- --aCGGGCGCGcGGCGUGggugCGcCCGCCa -3'
miRNA:   3'- gcaGCCCGCGC-CCGUGCa---GCcGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 22438 0.68 0.466637
Target:  5'- aCGUC-GGCGauuuGGGCAacgugcgcucCGUCGGCugCACCg -3'
miRNA:   3'- -GCAGcCCGCg---CCCGU----------GCAGCCG--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.