miRNA: 3'- -GCGCGCAGUAgUUUUCuuUCG---AGCGG- -5'
miRNA: 3'- gCGCGCAGUaGUUUUCUuuc----GAGCGG- -5'
miRNA: 3'- -GCGCGCAGUAGUUUUCUUUCGAGCGG- -5'
Results 41 - 43 of 43 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22856 | 3' | -49 | NC_005137.2 | + | 95213 | 0.75 | 0.799635 |
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Target: 5'- aCGCGUGUCGUgAAGGGcuAGCcaaUUGCCa -3' miRNA: 3'- -GCGCGCAGUAgUUUUCuuUCG---AGCGG- -5' |
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| 22856 | 3' | -49 | NC_005137.2 | + | 74915 | 0.77 | 0.698261 |
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Target: 5'- uGCGCGUCA-CAAAGGGuucgcacCUCGCCa -3' miRNA: 3'- gCGCGCAGUaGUUUUCUuuc----GAGCGG- -5' |
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| 22856 | 3' | -49 | NC_005137.2 | + | 125894 | 1.13 | 0.00657 |
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Target: 5'- gCGCGCGUCAUCAAAAGAAAGCUCGCCu -3' miRNA: 3'- -GCGCGCAGUAGUUUUCUUUCGAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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