miRNA display CGI


Results 41 - 43 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 3' -49 NC_005137.2 + 95213 0.75 0.799635
Target:  5'- aCGCGUGUCGUgAAGGGcuAGCcaaUUGCCa -3'
miRNA:   3'- -GCGCGCAGUAgUUUUCuuUCG---AGCGG- -5'
22856 3' -49 NC_005137.2 + 74915 0.77 0.698261
Target:  5'- uGCGCGUCA-CAAAGGGuucgcacCUCGCCa -3'
miRNA:   3'- gCGCGCAGUaGUUUUCUuuc----GAGCGG- -5'
22856 3' -49 NC_005137.2 + 125894 1.13 0.00657
Target:  5'- gCGCGCGUCAUCAAAAGAAAGCUCGCCu -3'
miRNA:   3'- -GCGCGCAGUAGUUUUCUUUCGAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.