miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22857 3' -51.8 NC_005137.2 + 123656 1.12 0.004051
Target:  5'- gCCGGCACCAGCAACAUGACUCAACUGg -3'
miRNA:   3'- -GGCCGUGGUCGUUGUACUGAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 22394 0.75 0.652065
Target:  5'- cCCuacGCACCGGCAACAUGGCgCGcCUGa -3'
miRNA:   3'- -GGc--CGUGGUCGUUGUACUGaGUuGAC- -5'
22857 3' -51.8 NC_005137.2 + 95445 0.73 0.735795
Target:  5'- aUGGCGCCGGCGguGCGUGuCUUGACa- -3'
miRNA:   3'- gGCCGUGGUCGU--UGUACuGAGUUGac -5'
22857 3' -51.8 NC_005137.2 + 32655 0.72 0.798529
Target:  5'- aCCGGCGCacaAGCGugacggugacguacgACAUGACgUCAACa- -3'
miRNA:   3'- -GGCCGUGg--UCGU---------------UGUACUG-AGUUGac -5'
22857 3' -51.8 NC_005137.2 + 64530 0.72 0.813273
Target:  5'- gUGcGCACCGGCAACGUuGAC-CAACg- -3'
miRNA:   3'- gGC-CGUGGUCGUUGUA-CUGaGUUGac -5'
22857 3' -51.8 NC_005137.2 + 87939 0.71 0.848055
Target:  5'- aCCGGUugC-GCGucACAaauUGACUUAACUGg -3'
miRNA:   3'- -GGCCGugGuCGU--UGU---ACUGAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 28897 0.7 0.864205
Target:  5'- gUGGCGUCGGUGAUAUGGCUUAugUGc -3'
miRNA:   3'- gGCCGUGGUCGUUGUACUGAGUugAC- -5'
22857 3' -51.8 NC_005137.2 + 113880 0.7 0.879449
Target:  5'- gCUGGUGaCGGCAAUGUGGCUC-GCUGa -3'
miRNA:   3'- -GGCCGUgGUCGUUGUACUGAGuUGAC- -5'
22857 3' -51.8 NC_005137.2 + 101428 0.7 0.879449
Target:  5'- uUGGCACCAccucCAACGgcUGAUUCAAUUGg -3'
miRNA:   3'- gGCCGUGGUc---GUUGU--ACUGAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 25487 0.69 0.907037
Target:  5'- aCGGUGCCAGCAGCcguGUGGCgCcGCUu -3'
miRNA:   3'- gGCCGUGGUCGUUG---UACUGaGuUGAc -5'
22857 3' -51.8 NC_005137.2 + 7364 0.69 0.925071
Target:  5'- gCUGGUGCCGGCAaaauaGCGUGGgucUUCAGCg- -3'
miRNA:   3'- -GGCCGUGGUCGU-----UGUACU---GAGUUGac -5'
22857 3' -51.8 NC_005137.2 + 15751 0.68 0.9358
Target:  5'- gCGGCGCCAGCGucgcCAUGugUucguCGACc- -3'
miRNA:   3'- gGCCGUGGUCGUu---GUACugA----GUUGac -5'
22857 3' -51.8 NC_005137.2 + 31228 0.68 0.93931
Target:  5'- gCGGCacACCAGCuugAACAUGgccgcgucgugcgcGCUCAACUc -3'
miRNA:   3'- gGCCG--UGGUCG---UUGUAC--------------UGAGUUGAc -5'
22857 3' -51.8 NC_005137.2 + 32335 0.68 0.940777
Target:  5'- gUGGC-CCAGCAGCAcGA-UCAGCUc -3'
miRNA:   3'- gGCCGuGGUCGUUGUaCUgAGUUGAc -5'
22857 3' -51.8 NC_005137.2 + 5958 0.68 0.940777
Target:  5'- uCCGGCGCCGcGCcGCccGGCUCcgUUGc -3'
miRNA:   3'- -GGCCGUGGU-CGuUGuaCUGAGuuGAC- -5'
22857 3' -51.8 NC_005137.2 + 20575 0.68 0.949964
Target:  5'- aCCGaGgACCucGCGACAUGACcgUCGACg- -3'
miRNA:   3'- -GGC-CgUGGu-CGUUGUACUG--AGUUGac -5'
22857 3' -51.8 NC_005137.2 + 121542 0.67 0.954179
Target:  5'- aCCGGCGCgaaAGCAccACGUGgcacaauaauuuGCUCAaaauGCUGg -3'
miRNA:   3'- -GGCCGUGg--UCGU--UGUAC------------UGAGU----UGAC- -5'
22857 3' -51.8 NC_005137.2 + 115270 0.67 0.958148
Target:  5'- gCUGGCGCC-GCGACcuUGGCgagCAGCg- -3'
miRNA:   3'- -GGCCGUGGuCGUUGu-ACUGa--GUUGac -5'
22857 3' -51.8 NC_005137.2 + 124964 0.67 0.958148
Target:  5'- gCGGCGCCGGUGAUggGGCgcugcGCUGc -3'
miRNA:   3'- gGCCGUGGUCGUUGuaCUGagu--UGAC- -5'
22857 3' -51.8 NC_005137.2 + 59315 0.67 0.958148
Target:  5'- gCGGCACCAGCAccucGAUcCGGCUa -3'
miRNA:   3'- gGCCGUGGUCGUuguaCUGaGUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.