miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22858	3'	-57.6	NC_005137.2	+	80356	0.66	0.761922
	Target:  5'- aGCGGUcaaauaugaGGGCGGCaag-GUGCUGCAGc -3' miRNA:   3'- aCGCCA---------CCCGCCGauaaCGUGGUGUU- -5'
22858	3'	-57.6	NC_005137.2	+	70594	0.66	0.752151
	Target:  5'- cUGCGc-GGGCGGCUuuUUGUugCGCu- -3' miRNA:   3'- -ACGCcaCCCGCCGAu-AACGugGUGuu -5'
22858	3'	-57.6	NC_005137.2	+	103811	0.66	0.742271
	Target:  5'- uUGCuGGUGugcGGCGGCggguuggUGCACgGCAu -3' miRNA:   3'- -ACG-CCAC---CCGCCGaua----ACGUGgUGUu -5'
22858	3'	-57.6	NC_005137.2	+	53095	0.67	0.712066
	Target:  5'- gUGCaGGUGGGUGuGUUugcgGUUGCACgACGc -3' miRNA:   3'- -ACG-CCACCCGC-CGA----UAACGUGgUGUu -5'
22858	3'	-57.6	NC_005137.2	+	75584	0.67	0.681222
	Target:  5'- gGCGGacgcGGGCGGCgccgUGCGCguggaGCAAg -3' miRNA:   3'- aCGCCa---CCCGCCGaua-ACGUGg----UGUU- -5'
22858	3'	-57.6	NC_005137.2	+	8635	0.68	0.670843
	Target:  5'- gGCGGgcgUGGGCGuGCUAUUG-GCCGgAGg -3' miRNA:   3'- aCGCC---ACCCGC-CGAUAACgUGGUgUU- -5'
22858	3'	-57.6	NC_005137.2	+	103580	0.68	0.618637
	Target:  5'- aGCGcGUGGGCcaGCUGUUacaGCGCUGCAGc -3' miRNA:   3'- aCGC-CACCCGc-CGAUAA---CGUGGUGUU- -5'
22858	3'	-57.6	NC_005137.2	+	123537	1.06	0.002018
	Target:  5'- uUGCGGUGGGCGGCUAUUGCACCACAAa -3' miRNA:   3'- -ACGCCACCCGCCGAUAACGUGGUGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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