miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22858 5' -47.1 NC_005137.2 + 44972 0.66 0.999777
Target:  5'- aUUCGUuauaauGUUGCAAcauggCGCGAGGCGAGc -3'
miRNA:   3'- gGAGCGc-----UAACGUUa----GCGCUUUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 123571 1.11 0.014555
Target:  5'- gCCUCGCGAUUGCAAUCGCGAAACAAGc -3'
miRNA:   3'- -GGAGCGCUAACGUUAGCGCUUUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 8130 0.73 0.964914
Target:  5'- uUUCGaGAUUGUacGAUCGCGAAACAc- -3'
miRNA:   3'- gGAGCgCUAACG--UUAGCGCUUUGUuc -5'
22858 5' -47.1 NC_005137.2 + 105359 0.72 0.974317
Target:  5'- -aUCGCGAUUguaGCAGUUGCGcGACAc- -3'
miRNA:   3'- ggAGCGCUAA---CGUUAGCGCuUUGUuc -5'
22858 5' -47.1 NC_005137.2 + 89762 0.72 0.976999
Target:  5'- -aUCGCGAUUGCGuUCGCGuuuccAGCGu- -3'
miRNA:   3'- ggAGCGCUAACGUuAGCGCu----UUGUuc -5'
22858 5' -47.1 NC_005137.2 + 123964 0.68 0.998397
Target:  5'- aCggGUGAaUGCGAUUGCGGcGACGAGg -3'
miRNA:   3'- gGagCGCUaACGUUAGCGCU-UUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 87151 0.67 0.998851
Target:  5'- aCUCGCGAUccgcgGCGuuucgcacgugcaaAUCGCGuucGACGGGc -3'
miRNA:   3'- gGAGCGCUAa----CGU--------------UAGCGCu--UUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 85912 0.67 0.999288
Target:  5'- gCC-CGCGAgugGCAgagcaaGUCGCGcGAACAAc -3'
miRNA:   3'- -GGaGCGCUaa-CGU------UAGCGC-UUUGUUc -5'
22858 5' -47.1 NC_005137.2 + 103549 0.66 0.999637
Target:  5'- aCgUCGCGAcgucaaUUGCGcgUaCGAGACAAGc -3'
miRNA:   3'- -GgAGCGCU------AACGUuaGcGCUUUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 112678 0.66 0.999714
Target:  5'- gUCUCGUaGAUuuuggcguccgUGCAGUCGCGAuGCc-- -3'
miRNA:   3'- -GGAGCG-CUA-----------ACGUUAGCGCUuUGuuc -5'
22858 5' -47.1 NC_005137.2 + 8454 0.66 0.999866
Target:  5'- aCUCGCuuacGCAAUUGCGAcGCGc- -3'
miRNA:   3'- gGAGCGcuaaCGUUAGCGCUuUGUuc -5'
22858 5' -47.1 NC_005137.2 + 7438 0.96 0.113618
Target:  5'- uUUCGCGAUUGCAAUCGCGAGGCAc- -3'
miRNA:   3'- gGAGCGCUAACGUUAGCGCUUUGUuc -5'
22858 5' -47.1 NC_005137.2 + 52104 0.66 0.999637
Target:  5'- --gUGCGGacaGUAAUCGCGAAACGc- -3'
miRNA:   3'- ggaGCGCUaa-CGUUAGCGCUUUGUuc -5'
22858 5' -47.1 NC_005137.2 + 118753 0.66 0.999637
Target:  5'- --aCGCuGUUGUAAUUGUGGAACAc- -3'
miRNA:   3'- ggaGCGcUAACGUUAGCGCUUUGUuc -5'
22858 5' -47.1 NC_005137.2 + 41251 0.67 0.999428
Target:  5'- --aCGCGAacGCAAUCGCGAu----- -3'
miRNA:   3'- ggaGCGCUaaCGUUAGCGCUuuguuc -5'
22858 5' -47.1 NC_005137.2 + 122549 0.68 0.998397
Target:  5'- aUCggCGCGuc-GCAAUUGCGuAAGCGAGu -3'
miRNA:   3'- -GGa-GCGCuaaCGUUAGCGC-UUUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 27874 0.68 0.998065
Target:  5'- -aUUGCGGguugGCGAUCGCGugGCGGc -3'
miRNA:   3'- ggAGCGCUaa--CGUUAGCGCuuUGUUc -5'
22858 5' -47.1 NC_005137.2 + 2253 0.68 0.997677
Target:  5'- --gCGCGAUUGCGcgCGuUGAuuGACGGGa -3'
miRNA:   3'- ggaGCGCUAACGUuaGC-GCU--UUGUUC- -5'
22858 5' -47.1 NC_005137.2 + 108183 0.69 0.994639
Target:  5'- cCCUCGCGuuugGCAA-CGCGcAAgAAGa -3'
miRNA:   3'- -GGAGCGCuaa-CGUUaGCGCuUUgUUC- -5'
22858 5' -47.1 NC_005137.2 + 43843 0.72 0.976999
Target:  5'- --aCGCGAuUUGCAcgUGCGAAACGc- -3'
miRNA:   3'- ggaGCGCU-AACGUuaGCGCUUUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.