miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22859 3' -53.9 NC_005137.2 + 78747 0.66 0.933419
Target:  5'- -cGGUcUGCCcgGGCGccguuuguaaccagAGCUucuGCGGCGa -3'
miRNA:   3'- uuCCAaACGGuaCCGU--------------UCGG---UGCUGC- -5'
22859 3' -53.9 NC_005137.2 + 17237 0.66 0.929695
Target:  5'- gGAGGcg-GUCAUGGCG-GCUaaACGACa -3'
miRNA:   3'- -UUCCaaaCGGUACCGUuCGG--UGCUGc -5'
22859 3' -53.9 NC_005137.2 + 90529 0.66 0.929695
Target:  5'- -uGGUUaGCguUGGCGAGCguCACGAUc -3'
miRNA:   3'- uuCCAAaCGguACCGUUCG--GUGCUGc -5'
22859 3' -53.9 NC_005137.2 + 11282 0.66 0.929695
Target:  5'- cAGG-UUGCCAUGGgc-GCUgcGCGGCGg -3'
miRNA:   3'- uUCCaAACGGUACCguuCGG--UGCUGC- -5'
22859 3' -53.9 NC_005137.2 + 97364 0.66 0.914752
Target:  5'- -cGGUUUGCCG-GGCAGaaacuugaacacguuGCCGCG-Ca -3'
miRNA:   3'- uuCCAAACGGUaCCGUU---------------CGGUGCuGc -5'
22859 3' -53.9 NC_005137.2 + 78368 0.66 0.905983
Target:  5'- gGAGGUUgcUGCgGUGGU-GGCUgagGCGGCGg -3'
miRNA:   3'- -UUCCAA--ACGgUACCGuUCGG---UGCUGC- -5'
22859 3' -53.9 NC_005137.2 + 45475 0.66 0.905337
Target:  5'- --cGUUUGUCAUGGUuucguuucuggacAAGUCGCGACc -3'
miRNA:   3'- uucCAAACGGUACCG-------------UUCGGUGCUGc -5'
22859 3' -53.9 NC_005137.2 + 99745 0.68 0.852422
Target:  5'- -cGGUa-GCCAUGGCGagcacuaauuguuuGGCCGCG-CGa -3'
miRNA:   3'- uuCCAaaCGGUACCGU--------------UCGGUGCuGC- -5'
22859 3' -53.9 NC_005137.2 + 9245 0.7 0.764123
Target:  5'- -uGGcUUGCCAUGGCAAaCCuugaGACGg -3'
miRNA:   3'- uuCCaAACGGUACCGUUcGGug--CUGC- -5'
22859 3' -53.9 NC_005137.2 + 86088 0.71 0.681936
Target:  5'- -cGGc--GUCAUGGUAcGCCGCGACGa -3'
miRNA:   3'- uuCCaaaCGGUACCGUuCGGUGCUGC- -5'
22859 3' -53.9 NC_005137.2 + 30015 0.75 0.454156
Target:  5'- -cGGUUggacaGgCGUGGCAGGCUAUGACGg -3'
miRNA:   3'- uuCCAAa----CgGUACCGUUCGGUGCUGC- -5'
22859 3' -53.9 NC_005137.2 + 121764 1.06 0.004773
Target:  5'- cAAGGUUUGCCAUGGCAAGCCACGACGu -3'
miRNA:   3'- -UUCCAAACGGUACCGUUCGGUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.