miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22861 3' -53.3 NC_005137.2 + 96923 0.71 0.68666
Target:  5'- uAUUUGuuucGCGCCCGCGUGUGCAu-- -3'
miRNA:   3'- -UAAACugu-UGCGGGUGCACGCGUcaa -5'
22861 3' -53.3 NC_005137.2 + 110654 0.7 0.738031
Target:  5'- cGUUUGGCuugUGCCCgugacggGCGUGCGCGGa- -3'
miRNA:   3'- -UAAACUGuu-GCGGG-------UGCACGCGUCaa -5'
22861 3' -53.3 NC_005137.2 + 35135 0.7 0.749271
Target:  5'- gGUUUGACAcGCGCCauugaaaACGUGgGCAGc- -3'
miRNA:   3'- -UAAACUGU-UGCGGg------UGCACgCGUCaa -5'
22861 3' -53.3 NC_005137.2 + 64538 0.69 0.834794
Target:  5'- ---cGGCAACGUugaCCaACGUGCGCAcGUUa -3'
miRNA:   3'- uaaaCUGUUGCG---GG-UGCACGCGU-CAA- -5'
22861 3' -53.3 NC_005137.2 + 17401 0.68 0.859971
Target:  5'- cGUUUGcgcGCAAUGCCacuguuucuUACGUGUGCGGUg -3'
miRNA:   3'- -UAAAC---UGUUGCGG---------GUGCACGCGUCAa -5'
22861 3' -53.3 NC_005137.2 + 116843 0.66 0.922599
Target:  5'- uGUUUGAgGACGCgUACGUGgauuggaGCGGUg -3'
miRNA:   3'- -UAAACUgUUGCGgGUGCACg------CGUCAa -5'
22861 3' -53.3 NC_005137.2 + 125146 0.66 0.922599
Target:  5'- -cUUGACAAUGCaccgccgcugaCACGaugGCGCGGUg -3'
miRNA:   3'- uaAACUGUUGCGg----------GUGCa--CGCGUCAa -5'
22861 3' -53.3 NC_005137.2 + 26670 0.66 0.938807
Target:  5'- ---cGACGACGCaCgCACGUGCGaacGUUu -3'
miRNA:   3'- uaaaCUGUUGCG-G-GUGCACGCgu-CAA- -5'
22861 3' -53.3 NC_005137.2 + 99956 0.66 0.943682
Target:  5'- ---gGACAACGgCCGCGgccGCGCGc-- -3'
miRNA:   3'- uaaaCUGUUGCgGGUGCa--CGCGUcaa -5'
22861 3' -53.3 NC_005137.2 + 101025 0.75 0.456266
Target:  5'- --aUGGCAACGCCCACaauaauuuUGCGCGGg- -3'
miRNA:   3'- uaaACUGUUGCGGGUGc-------ACGCGUCaa -5'
22861 3' -53.3 NC_005137.2 + 118032 1.03 0.008435
Target:  5'- aAUUUGACAACGCCCACGUGCGCAGUUu -3'
miRNA:   3'- -UAAACUGUUGCGGGUGCACGCGUCAA- -5'
22861 3' -53.3 NC_005137.2 + 103479 0.75 0.475887
Target:  5'- -gUUGAUAACGgUCAUGUGCGCGGa- -3'
miRNA:   3'- uaAACUGUUGCgGGUGCACGCGUCaa -5'
22861 3' -53.3 NC_005137.2 + 100003 0.73 0.579311
Target:  5'- ----aGCGGCGCCgaccaGCGUGCGCGGUUg -3'
miRNA:   3'- uaaacUGUUGCGGg----UGCACGCGUCAA- -5'
22861 3' -53.3 NC_005137.2 + 16204 0.69 0.807781
Target:  5'- --cUGACGACGaCgACGUGCGCAa-- -3'
miRNA:   3'- uaaACUGUUGCgGgUGCACGCGUcaa -5'
22861 3' -53.3 NC_005137.2 + 24804 0.68 0.875629
Target:  5'- -cUUGGCGaccGCGuCCCACGUGCGgauGGUg -3'
miRNA:   3'- uaAACUGU---UGC-GGGUGCACGCg--UCAa -5'
22861 3' -53.3 NC_005137.2 + 55019 0.67 0.897296
Target:  5'- --gUGGCAAUGgCC-CGUGCGCcGUg -3'
miRNA:   3'- uaaACUGUUGCgGGuGCACGCGuCAa -5'
22861 3' -53.3 NC_005137.2 + 122914 0.67 0.897296
Target:  5'- aAUUUGuAUAugGCCCAUGUG-GUGGUg -3'
miRNA:   3'- -UAAAC-UGUugCGGGUGCACgCGUCAa -5'
22861 3' -53.3 NC_005137.2 + 80902 0.66 0.916666
Target:  5'- --aUGGCcACGCUCACGcgcauuUGCGCGGc- -3'
miRNA:   3'- uaaACUGuUGCGGGUGC------ACGCGUCaa -5'
22861 3' -53.3 NC_005137.2 + 7678 0.66 0.928266
Target:  5'- -gUUGGCGcaGCGUCCAUGUGCcuuccaaaGUAGUa -3'
miRNA:   3'- uaAACUGU--UGCGGGUGCACG--------CGUCAa -5'
22861 3' -53.3 NC_005137.2 + 103082 0.66 0.933669
Target:  5'- uUUUG-CGAUuaCCGCGUGCGCAa-- -3'
miRNA:   3'- uAAACuGUUGcgGGUGCACGCGUcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.