miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22861 5' -47.3 NC_005137.2 + 11377 0.66 0.999343
Target:  5'- --cACgGCGCCaUUGGgGUUuGUGGUGg -3'
miRNA:   3'- guuUGgCGUGGaAACUgCAA-CAUCAC- -5'
22861 5' -47.3 NC_005137.2 + 130051 0.67 0.999184
Target:  5'- aAAGCCGCGCCUUauugcgccgaUGACGggcgcUGGUc -3'
miRNA:   3'- gUUUGGCGUGGAA----------ACUGCaac--AUCAc -5'
22861 5' -47.3 NC_005137.2 + 100558 0.67 0.998664
Target:  5'- aCGAGCCGCGCagcagaaccGCGUUGUcgAGUGc -3'
miRNA:   3'- -GUUUGGCGUGgaaac----UGCAACA--UCAC- -5'
22861 5' -47.3 NC_005137.2 + 83690 0.7 0.984201
Target:  5'- aCAAACCGUacaGCCUUUGAUaaucuUUGUGGUu -3'
miRNA:   3'- -GUUUGGCG---UGGAAACUGc----AACAUCAc -5'
22861 5' -47.3 NC_005137.2 + 20984 0.74 0.921584
Target:  5'- --uGCCGCGCUugcacgcaaacgggUUUGACGUaGUAGUGu -3'
miRNA:   3'- guuUGGCGUGG--------------AAACUGCAaCAUCAC- -5'
22861 5' -47.3 NC_005137.2 + 95571 0.76 0.824533
Target:  5'- uCAAACgGCAgCgugUUGGCGUUGUAGUu -3'
miRNA:   3'- -GUUUGgCGUgGa--AACUGCAACAUCAc -5'
22861 5' -47.3 NC_005137.2 + 118067 1.11 0.013112
Target:  5'- aCAAACCGCACCUUUGACGUUGUAGUGg -3'
miRNA:   3'- -GUUUGGCGUGGAAACUGCAACAUCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.