miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22862 3' -54.2 NC_005137.2 + 39811 0.69 0.819802
Target:  5'- aACACGcgUGCAACcaaacGCcGCGCCACgGa -3'
miRNA:   3'- -UGUGCuaACGUUGc----CGaCGUGGUGgU- -5'
22862 3' -54.2 NC_005137.2 + 59630 0.69 0.801691
Target:  5'- aGCGCGccacuuuUUGCAACGGCa-CGCCGCUg -3'
miRNA:   3'- -UGUGCu------AACGUUGCCGacGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 50625 0.69 0.792384
Target:  5'- uACACGccgGCAcGgGGCUGCAgCACCu -3'
miRNA:   3'- -UGUGCuaaCGU-UgCCGACGUgGUGGu -5'
22862 3' -54.2 NC_005137.2 + 90604 0.69 0.782924
Target:  5'- aACACGAUcucGCAAucggUGGCUGCACaaauccacaGCCAa -3'
miRNA:   3'- -UGUGCUAa--CGUU----GCCGACGUGg--------UGGU- -5'
22862 3' -54.2 NC_005137.2 + 65583 0.69 0.782924
Target:  5'- uACACGg--GCAACGGCauuggGUGCCGCUc -3'
miRNA:   3'- -UGUGCuaaCGUUGCCGa----CGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 105360 0.69 0.773319
Target:  5'- uCGCGAUUGUAGCaGUUGCGCgACa- -3'
miRNA:   3'- uGUGCUAACGUUGcCGACGUGgUGgu -5'
22862 3' -54.2 NC_005137.2 + 117248 0.69 0.773319
Target:  5'- cCACGGUUGCcgcugaacauGACGcGCUGCACgGCg- -3'
miRNA:   3'- uGUGCUAACG----------UUGC-CGACGUGgUGgu -5'
22862 3' -54.2 NC_005137.2 + 123971 0.7 0.757675
Target:  5'- aAUGCGAUUGCGGCGacgaggccgugacgcGCgUGCGCCACg- -3'
miRNA:   3'- -UGUGCUAACGUUGC---------------CG-ACGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 105491 0.7 0.753715
Target:  5'- cGCGCG-UUGCAACGaGCgugacgGCGCCAUg- -3'
miRNA:   3'- -UGUGCuAACGUUGC-CGa-----CGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 22443 0.7 0.723476
Target:  5'- -gGCGAUuuggGCAAcgugcgcuccguCGGCUGCACCGCg- -3'
miRNA:   3'- ugUGCUAa---CGUU------------GCCGACGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 112399 0.72 0.650447
Target:  5'- uGCGCGAUcGCGcACGGC-GCGCCAUUg -3'
miRNA:   3'- -UGUGCUAaCGU-UGCCGaCGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 40825 0.72 0.618724
Target:  5'- aGCGCGuuugugagaAUUGUAACGcGUUGCACgCGCCAa -3'
miRNA:   3'- -UGUGC---------UAACGUUGC-CGACGUG-GUGGU- -5'
22862 3' -54.2 NC_005137.2 + 84947 0.73 0.597615
Target:  5'- cGCACGcugUGCAGCGGCgGCAUaACCu -3'
miRNA:   3'- -UGUGCua-ACGUUGCCGaCGUGgUGGu -5'
22862 3' -54.2 NC_005137.2 + 61832 0.73 0.545446
Target:  5'- aGCGCGucuUUGCcgAGCGuGuCUGCGCCACCGu -3'
miRNA:   3'- -UGUGCu--AACG--UUGC-C-GACGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 85553 0.74 0.535174
Target:  5'- -aACGcgUGC-GCGuGCUGCGCCGCCc -3'
miRNA:   3'- ugUGCuaACGuUGC-CGACGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 32554 0.74 0.504792
Target:  5'- cAUACGGccgUGCAcGCGGCUGCuugcgcuuuaACCGCCAa -3'
miRNA:   3'- -UGUGCUa--ACGU-UGCCGACG----------UGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 72336 0.76 0.418728
Target:  5'- aACGCGaAUUGC-GCGaGCUGCGCCGCUc -3'
miRNA:   3'- -UGUGC-UAACGuUGC-CGACGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 113517 1.08 0.003637
Target:  5'- aACACGAUUGCAACGGCUGCACCACCAc -3'
miRNA:   3'- -UGUGCUAACGUUGCCGACGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.