miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22863 5' -50.5 NC_005137.2 + 37440 0.66 0.984009
Target:  5'- -cGUGAuugccGCcgCGCACCACGuauuugcgcucgauCCGGUCa -3'
miRNA:   3'- aaCACUu----UGa-GCGUGGUGUu-------------GGUCAG- -5'
22863 5' -50.5 NC_005137.2 + 110088 0.67 0.978741
Target:  5'- uUUG-GAAACcgCGCGCCAgAugCGGUa -3'
miRNA:   3'- -AACaCUUUGa-GCGUGGUgUugGUCAg -5'
22863 5' -50.5 NC_005137.2 + 17620 0.67 0.976202
Target:  5'- aUGUGGAcGCuUCGUugCugAGCCAGa- -3'
miRNA:   3'- aACACUU-UG-AGCGugGugUUGGUCag -5'
22863 5' -50.5 NC_005137.2 + 50216 0.67 0.967263
Target:  5'- -cGUGGucaagccaAACUCGCGCaGCAGCUcggGGUCg -3'
miRNA:   3'- aaCACU--------UUGAGCGUGgUGUUGG---UCAG- -5'
22863 5' -50.5 NC_005137.2 + 8506 0.67 0.967263
Target:  5'- -cGUGAAAaagaCGCGCgGCGACgCAGUUa -3'
miRNA:   3'- aaCACUUUga--GCGUGgUGUUG-GUCAG- -5'
22863 5' -50.5 NC_005137.2 + 7261 0.68 0.960121
Target:  5'- -cGUuGAcCUCGCgACCuaACAACCGGUCa -3'
miRNA:   3'- aaCAcUUuGAGCG-UGG--UGUUGGUCAG- -5'
22863 5' -50.5 NC_005137.2 + 81952 0.68 0.947505
Target:  5'- -aGUGc-GCUCGCACgGCuACCuGUCg -3'
miRNA:   3'- aaCACuuUGAGCGUGgUGuUGGuCAG- -5'
22863 5' -50.5 NC_005137.2 + 87421 0.69 0.942773
Target:  5'- gUGUGuGACUUGgGCaACGACCAGUa -3'
miRNA:   3'- aACACuUUGAGCgUGgUGUUGGUCAg -5'
22863 5' -50.5 NC_005137.2 + 110743 0.7 0.908684
Target:  5'- ------cACUCGCGCUugGGCCAGUUu -3'
miRNA:   3'- aacacuuUGAGCGUGGugUUGGUCAG- -5'
22863 5' -50.5 NC_005137.2 + 66422 0.7 0.887998
Target:  5'- gUGUcggGAAACUUGCGCaAUAACCAGUa -3'
miRNA:   3'- aACA---CUUUGAGCGUGgUGUUGGUCAg -5'
22863 5' -50.5 NC_005137.2 + 110032 0.7 0.887998
Target:  5'- -cGUGcAAGCgcggcaaaacgCGCGCCGCAggcagcagacGCCAGUCg -3'
miRNA:   3'- aaCAC-UUUGa----------GCGUGGUGU----------UGGUCAG- -5'
22863 5' -50.5 NC_005137.2 + 119069 0.75 0.657912
Target:  5'- -cGUGGA-CUCGCACCACAGCaaaaucuGUCc -3'
miRNA:   3'- aaCACUUuGAGCGUGGUGUUGgu-----CAG- -5'
22863 5' -50.5 NC_005137.2 + 110467 1.09 0.007035
Target:  5'- uUUGUGAAACUCGCACCACAACCAGUCg -3'
miRNA:   3'- -AACACUUUGAGCGUGGUGUUGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.