Results 41 - 60 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 46450 | 0.68 | 0.942087 |
Target: 5'- gAACGCGcCGACGuguUGCAcagcaucauuauguACGCGUUGAAc -3' miRNA: 3'- gUUGCGC-GUUGU---ACGU--------------UGUGCGACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 66453 | 0.67 | 0.956812 |
Target: 5'- aAACGUGUcgcuuAACGUGCG-CACGUUGGu -3' miRNA: 3'- gUUGCGCG-----UUGUACGUuGUGCGACUu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 26546 | 0.67 | 0.956812 |
Target: 5'- -cACGUGCAACAaGuCGugGCGCUGc- -3' miRNA: 3'- guUGCGCGUUGUaC-GUugUGCGACuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 9739 | 0.67 | 0.964368 |
Target: 5'- aUAACGUGCAccuGCAcuuguUGCcGCAUGUUGAGa -3' miRNA: 3'- -GUUGCGCGU---UGU-----ACGuUGUGCGACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 73302 | 0.67 | 0.964368 |
Target: 5'- -cACaCGCAGCAuuuuuUGCAGCGCGgaGAGc -3' miRNA: 3'- guUGcGCGUUGU-----ACGUUGUGCgaCUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 99298 | 0.67 | 0.960716 |
Target: 5'- aCGACGCG-AACGUGC-ACACGUcGGu -3' miRNA: 3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 31647 | 0.67 | 0.970946 |
Target: 5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3' miRNA: 3'- guUGCGCGUUguaCGUU-GUGCGACuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 49687 | 0.67 | 0.964368 |
Target: 5'- uGGCGCGCGGCG-GUAACuACGCg--- -3' miRNA: 3'- gUUGCGCGUUGUaCGUUG-UGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 45449 | 0.67 | 0.964368 |
Target: 5'- gUAGCGgGCGGC--GCAGCACGCg--- -3' miRNA: 3'- -GUUGCgCGUUGuaCGUUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 130851 | 0.67 | 0.967776 |
Target: 5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3' miRNA: 3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 95888 | 0.67 | 0.964368 |
Target: 5'- -cACGgGCAugGUGCGuCGCGgUGAc -3' miRNA: 3'- guUGCgCGUugUACGUuGUGCgACUu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 83291 | 0.67 | 0.970946 |
Target: 5'- aCAGCGCGgucaAACAggGCGACcCGCUGu- -3' miRNA: 3'- -GUUGCGCg---UUGUa-CGUUGuGCGACuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 11857 | 0.67 | 0.970946 |
Target: 5'- -cAUGCGCAaucugugcggacACAUGUAauACGCGCUGc- -3' miRNA: 3'- guUGCGCGU------------UGUACGU--UGUGCGACuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 2281 | 0.67 | 0.964368 |
Target: 5'- aAACGCGaacacucuaagGGCGUGCAcgacgGCACGUUGGAa -3' miRNA: 3'- gUUGCGCg----------UUGUACGU-----UGUGCGACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 26130 | 0.67 | 0.967776 |
Target: 5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3' miRNA: 3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 6621 | 0.67 | 0.967776 |
Target: 5'- aCGACGCGCGcGCA-GCAugACGUUa-- -3' miRNA: 3'- -GUUGCGCGU-UGUaCGUugUGCGAcuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 81599 | 0.66 | 0.983311 |
Target: 5'- uGACGCgGCAGCAguaagcagggucgUGC-ACACGCcGGAa -3' miRNA: 3'- gUUGCG-CGUUGU-------------ACGuUGUGCGaCUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 3600 | 0.66 | 0.979108 |
Target: 5'- aGACGCGCAACAguuUGCGACuCGa---- -3' miRNA: 3'- gUUGCGCGUUGU---ACGUUGuGCgacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 25509 | 0.66 | 0.981408 |
Target: 5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3' miRNA: 3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 51889 | 0.66 | 0.981408 |
Target: 5'- aAACGUguauaguuagaGCAGCGguUGCGACACGUgGAAa -3' miRNA: 3'- gUUGCG-----------CGUUGU--ACGUUGUGCGaCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home