Results 61 - 72 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 50842 | 0.66 | 0.976604 |
Target: 5'- aCAACGCGCAAacgGCGGCAaCGUUu-- -3' miRNA: 3'- -GUUGCGCGUUguaCGUUGU-GCGAcuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 112026 | 0.66 | 0.979108 |
Target: 5'- uGACGCGCugcGACGUGCucaucAACAUGCg--- -3' miRNA: 3'- gUUGCGCG---UUGUACG-----UUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 3600 | 0.66 | 0.979108 |
Target: 5'- aGACGCGCAACAguuUGCGACuCGa---- -3' miRNA: 3'- gUUGCGCGUUGU---ACGUUGuGCgacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 83210 | 0.66 | 0.979108 |
Target: 5'- gCAACGCGguGaAU-CAACACGUUGAc -3' miRNA: 3'- -GUUGCGCguUgUAcGUUGUGCGACUu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 45529 | 0.66 | 0.981408 |
Target: 5'- --gUGCGUcACGUGCAGCAauCGaCUGAAc -3' miRNA: 3'- guuGCGCGuUGUACGUUGU--GC-GACUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 108737 | 0.66 | 0.981408 |
Target: 5'- aAACGCGCAGaCAaaCGACGCGCa--- -3' miRNA: 3'- gUUGCGCGUU-GUacGUUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 25509 | 0.66 | 0.981408 |
Target: 5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3' miRNA: 3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 51889 | 0.66 | 0.981408 |
Target: 5'- aAACGUguauaguuagaGCAGCGguUGCGACACGUgGAAa -3' miRNA: 3'- gUUGCG-----------CGUUGU--ACGUUGUGCGaCUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 81599 | 0.66 | 0.983311 |
Target: 5'- uGACGCgGCAGCAguaagcagggucgUGC-ACACGCcGGAa -3' miRNA: 3'- gUUGCG-CGUUGU-------------ACGuUGUGCGaCUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 19591 | 0.66 | 0.983512 |
Target: 5'- gAACuGCGCGACAaGCugUACGCcGAAu -3' miRNA: 3'- gUUG-CGCGUUGUaCGuuGUGCGaCUU- -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 91190 | 0.66 | 0.983512 |
Target: 5'- cCGugGCGCGGCGUuugGUuGCACGCg--- -3' miRNA: 3'- -GUugCGCGUUGUA---CGuUGUGCGacuu -5' |
|||||||
22864 | 3' | -51 | NC_005137.2 | + | 93681 | 0.66 | 0.983512 |
Target: 5'- aGAUGCGCAACAgGCccaGCGCcGGAu -3' miRNA: 3'- gUUGCGCGUUGUaCGuugUGCGaCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home